Variant report

Variant	rs569109253
Chromosome Location	chr7:107893993-107893994
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:107886563..107889560-chr7:107893965..107897090,3	MCF-7	breast:
2	chr7:107893481..107895284-chr7:107986919..107989502,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv949344	chr7:107396502-107987085	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv831090	chr7:107786650-108011196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv888942	chr7:107893695-108055858	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	nsv888943	chr7:107893695-108058574	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:107887400-107894000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr7:107887400-107925000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:107887800-107894000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:107888000-107906800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr7:107889400-107894200	Weak transcription	Osteobl	bone
6	chr7:107891800-107895400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr7:107892000-107894000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr7:107892000-107894000	Enhancers	Brain Angular Gyrus	brain
9	chr7:107892000-107894000	Enhancers	Brain Hippocampus Middle	brain
10	chr7:107892000-107894000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:107892000-107894200	Enhancers	Brain Anterior Caudate	brain
12	chr7:107892000-107894600	Enhancers	K562	blood
13	chr7:107892000-107894800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr7:107892000-107895200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr7:107892600-107906600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr7:107892800-107894000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr7:107893000-107895000	Enhancers	Pancreatic Islets	Pancreatic Islet
18	chr7:107893200-107907400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr7:107893600-107894000	Enhancers	Brain Inferior Temporal Lobe	brain
20	chr7:107893600-107894000	Enhancers	Pancreas	Pancrea
21	chr7:107893600-107894400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:107893600-107894800	Flanking Active TSS	A549	lung
23	chr7:107893800-107894400	Enhancers	Fetal Muscle Leg	muscle
24	chr7:107893800-107894400	Enhancers	HMEC	breast

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