Variant report

Variant	rs569122254
Chromosome Location	chr19:44513197-44513198
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44507958..44509681-chr19:44512685..44515018,2	K562	blood:
2	chr19:44505048..44507661-chr19:44511684..44514598,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159882	Chromatin interaction
ENSG00000266921	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469650	chr19:44405994-44555426	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv961225	chr19:44512566-44513320	Weak transcription Strong transcription ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44508400-44513200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr19:44508400-44513600	Weak transcription	Hela-S3	cervix
3	chr19:44509200-44520600	ZNF genes & repeats	Liver	Liver
4	chr19:44509400-44516800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
5	chr19:44509400-44518200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:44509800-44516600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
7	chr19:44509800-44517000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr19:44509800-44517400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
9	chr19:44510000-44517000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
10	chr19:44510000-44517000	ZNF genes & repeats	Adipose Nuclei	Adipose
11	chr19:44510000-44517200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
12	chr19:44510000-44517400	ZNF genes & repeats	Primary T cells from cord blood	blood
13	chr19:44510200-44516600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
14	chr19:44510200-44517000	ZNF genes & repeats	GM12878-XiMat	blood
15	chr19:44510200-44517400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
16	chr19:44510200-44517600	ZNF genes & repeats	Primary B cells from cord blood	blood
17	chr19:44510400-44516400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
18	chr19:44510400-44517200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
19	chr19:44510400-44517600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
20	chr19:44510400-44517600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
21	chr19:44510600-44513200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr19:44510600-44513600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr19:44510600-44514400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr19:44510600-44516200	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
25	chr19:44510600-44516600	ZNF genes & repeats	Fetal Muscle Leg	muscle
26	chr19:44510600-44516600	ZNF genes & repeats	A549	lung
27	chr19:44510600-44517000	ZNF genes & repeats	Fetal Lung	lung
28	chr19:44510600-44517400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
29	chr19:44510600-44517600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
30	chr19:44510800-44513600	Strong transcription	Osteobl	bone
31	chr19:44510800-44516400	ZNF genes & repeats	Dnd41	blood
32	chr19:44510800-44516600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
33	chr19:44510800-44516600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
34	chr19:44510800-44516600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
35	chr19:44510800-44516800	ZNF genes & repeats	Brain Substantia Nigra	brain
36	chr19:44510800-44517000	ZNF genes & repeats	Fetal Muscle Trunk	muscle
37	chr19:44510800-44517200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
38	chr19:44510800-44517200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
39	chr19:44511000-44513400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr19:44511000-44514200	Strong transcription	Brain Angular Gyrus	brain
41	chr19:44511000-44515400	ZNF genes & repeats	Aorta	Aorta
42	chr19:44511000-44515600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
43	chr19:44511000-44515600	ZNF genes & repeats	Spleen	Spleen
44	chr19:44511000-44515800	ZNF genes & repeats	Esophagus	oesophagus
45	chr19:44511000-44516400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr19:44511000-44516400	ZNF genes & repeats	Fetal Brain Female	brain
47	chr19:44511000-44516400	ZNF genes & repeats	Thymus	Thymus
48	chr19:44511000-44516600	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
49	chr19:44511000-44516600	ZNF genes & repeats	Colon Smooth Muscle	Colon
50	chr19:44511000-44516800	ZNF genes & repeats	Fetal Kidney	kidney

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