Variant report
| Variant | rs56913226 |
|---|---|
| Chromosome Location | chr1:173677270-173677271 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000076321 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs14262 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16846301 | 0.81[AFR][1000 genomes] |
| rs1885679 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2227602 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2227617 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57068378 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57652095 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57688313 | 0.88[AFR][1000 genomes] |
| rs57740496 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59175258 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs60504641 | 1.00[AMR][1000 genomes] |
| rs61083918 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61625780 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1012384 | chr1:173614816-173974426 | Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 294 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014827 | chr1:173653453-173692470 | Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
