Variant report

Variant	rs569135469
Chromosome Location	chr3:161408030-161408031
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1004255	chr3:161340249-161476537	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv515615	chr3:161405094-161563784	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161407000-161409000	Enhancers	Fetal Brain Male	brain
2	chr3:161407400-161408800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr3:161407600-161408400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr3:161407600-161408600	Enhancers	Brain Germinal Matrix	brain
5	chr3:161407800-161408400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr3:161407800-161408400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr3:161407800-161408400	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr3:161407800-161408400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:161407800-161408400	Enhancers	Brain Angular Gyrus	brain
10	chr3:161408000-161408400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr3:161408000-161408400	Flanking Active TSS	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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