Variant report

Variant	rs569152481
Chromosome Location	chr5:124477397-124477398
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830475	chr5:124387292-124550256	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv599658	chr5:124459547-124513012	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv823205	chr5:124477336-124477983	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124471000-124478400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:124471400-124484600	Weak transcription	HSMM	muscle
3	chr5:124476000-124477400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:124476000-124477400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:124476000-124477400	Enhancers	Fetal Intestine Small	intestine
6	chr5:124476000-124478800	Enhancers	NHDF-Ad	bronchial
7	chr5:124476200-124477400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr5:124476200-124477400	Enhancers	Adipose Nuclei	Adipose
9	chr5:124476600-124477400	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr5:124477000-124479200	Weak transcription	Primary B cells from peripheral blood	blood
11	chr5:124477200-124488200	Weak transcription	HUVEC	blood vessel

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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