Variant report

Variant	rs569158868
Chromosome Location	chr6:28186008-28186009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:28184931..28189194-chr6:28190077..28194573,12	MCF-7	breast:
2	chr6:28184339..28187958-chr6:28190844..28194750,7	MCF-7	breast:
3	chr6:28182735..28195387-chr6:28315960..28325841,32	K562	blood:
4	chr6:28108272..28111912-chr6:28184259..28187979,3	MCF-7	breast:
5	chr6:28185564..28187470-chr6:28218621..28220714,2	MCF-7	breast:
6	chr6:27805809..27807448-chr6:28184413..28187037,2	MCF-7	breast:
7	chr6:28184789..28191313-chr6:28230652..28235913,7	K562	blood:
8	chr6:28183629..28195178-chr6:28316250..28325659,29	K562	blood:
9	chr6:28100317..28107200-chr6:28184436..28191088,8	MCF-7	breast:
10	chr6:28104139..28106070-chr6:28185714..28187223,2	MCF-7	breast:
11	chr6:28102723..28113786-chr6:28183725..28194756,41	K562	blood:
12	chr6:28184805..28186411-chr6:28255755..28258597,2	K562	blood:
13	chr6:28184981..28190782-chr6:28297491..28307222,23	K562	blood:
14	chr6:28184440..28186086-chr6:28227732..28230449,2	K562	blood:
15	chr6:28103775..28113920-chr6:28177995..28190115,32	K562	blood:
16	chr6:28182366..28191375-chr6:28300021..28306741,17	K562	blood:

No data

Variant related genes	Relation type
ENSG00000269293	Chromatin interaction
ENSG00000233822	Chromatin interaction
ENSG00000184348	Chromatin interaction
ENSG00000198315	Chromatin interaction
ENSG00000261839	Chromatin interaction
ENSG00000189298	Chromatin interaction
ENSG00000137185	Chromatin interaction
ENSG00000187626	Chromatin interaction
ENSG00000197062	Chromatin interaction
ENSG00000235109	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830620	chr6:28173997-28348033	Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	51 gene(s)	inside rSNPs	diseases
2	nsv527115	chr6:28185726-28186554	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28180800-28186400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:28183600-28186200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:28184600-28186600	Enhancers	Spleen	Spleen
4	chr6:28184800-28186200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:28184800-28186400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr6:28185200-28186400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr6:28185400-28186200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:28185400-28186200	Flanking Active TSS	K562	blood
9	chr6:28185400-28186400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:28185400-28186400	ZNF genes & repeats	Fetal Intestine Small	intestine
11	chr6:28185600-28186200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:28185600-28186400	Flanking Active TSS	Hela-S3	cervix
13	chr6:28185600-28186600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr6:28185600-28187000	Active TSS	H9 Cell Line	embryonic stem cell
15	chr6:28185600-28187400	Active TSS	Stomach Smooth Muscle	stomach
16	chr6:28185800-28186200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:28185800-28186200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:28185800-28186200	Active TSS	Liver	Liver
19	chr6:28185800-28186200	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr6:28185800-28186200	Enhancers	Lung	lung
21	chr6:28185800-28186200	Enhancers	Pancreas	Pancrea
22	chr6:28185800-28186200	Flanking Active TSS	Psoas Muscle	Psoas
23	chr6:28185800-28186400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
24	chr6:28185800-28186400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
25	chr6:28185800-28186400	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
26	chr6:28185800-28186400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr6:28185800-28186400	Flanking Active TSS	Right Ventricle	heart
28	chr6:28185800-28186400	Enhancers	Small Intestine	intestine
29	chr6:28185800-28186400	Flanking Active TSS	HepG2	liver
30	chr6:28185800-28186600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:28185800-28187000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
32	chr6:28185800-28187200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
33	chr6:28186000-28186200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
34	chr6:28186000-28186200	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr6:28186000-28186200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:28186000-28186200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
37	chr6:28186000-28186200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
38	chr6:28186000-28186200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr6:28186000-28186200	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr6:28186000-28186200	Enhancers	Primary monocytes fromperipheralblood	blood
41	chr6:28186000-28186200	Enhancers	Primary B cells from peripheral blood	blood
42	chr6:28186000-28186200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
43	chr6:28186000-28186200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr6:28186000-28186200	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
45	chr6:28186000-28186200	Enhancers	Cortex derived primary cultured neurospheres	brain
46	chr6:28186000-28186200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:28186000-28186200	Flanking Active TSS	Colonic Mucosa	Colon
48	chr6:28186000-28186200	Bivalent Enhancer	Fetal Intestine Large	intestine
49	chr6:28186000-28186200	Enhancers	Gastric	stomach
50	chr6:28186000-28186200	Bivalent Enhancer	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links