Variant report

Variant	rs569180669
Chromosome Location	chr2:98544784-98544785
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:98497589..98500393-chr2:98543704..98546124,2	MCF-7	breast:
2	chr2:98543155..98545618-chr2:98548793..98550382,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526360	chr2:98403683-98814054	Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521568	chr2:98403683-98826203	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1004220	chr2:98423421-98816010	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1007259	chr2:98429744-98818080	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv535832	chr2:98429744-98818080	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1009218	chr2:98442640-98816010	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1003925	chr2:98442640-98821102	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv999442	chr2:98448732-98816010	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv1013902	chr2:98454309-98818080	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1013416	chr2:98472701-98688729	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	esv3506993	chr2:98543670-98548968	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv3506999	chr2:98544070-98548868	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv3506992	chr2:98544118-98548340	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	esv3458073	chr2:98544638-98547974	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3506991	chr2:98544656-98547979	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3506997	chr2:98544674-98547977	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3458071	chr2:98544684-98547951	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3458072	chr2:98544690-98547908	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3506995	chr2:98544693-98547922	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3506994	chr2:98544721-98547918	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3458070	chr2:98544765-98547875	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3506998	chr2:98544775-98547874	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3458074	chr2:98544779-98547872	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
24	esv3507000	chr2:98544779-98547872	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:98504600-98552200	Weak transcription	NHLF	lung
2	chr2:98520200-98546000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr2:98520200-98552200	Weak transcription	Brain Angular Gyrus	brain
4	chr2:98520600-98550600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr2:98523400-98545800	Weak transcription	Fetal Kidney	kidney
6	chr2:98523400-98546200	Weak transcription	HUVEC	blood vessel
7	chr2:98524600-98552600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr2:98524800-98552200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr2:98525000-98551600	Weak transcription	Brain Cingulate Gyrus	brain
10	chr2:98525200-98547400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr2:98525600-98548200	Weak transcription	Pancreas	Pancrea
12	chr2:98528600-98550600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr2:98529000-98552200	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr2:98531000-98552400	Weak transcription	Right Atrium	heart
15	chr2:98531200-98552200	Weak transcription	Fetal Thymus	thymus
16	chr2:98531600-98546000	Weak transcription	Colon Smooth Muscle	Colon
17	chr2:98531600-98548200	Weak transcription	K562	blood
18	chr2:98533000-98547600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr2:98533800-98546000	Weak transcription	Fetal Heart	heart
20	chr2:98533800-98552000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr2:98534200-98547600	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr2:98534200-98551600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr2:98535600-98545600	Weak transcription	Brain Substantia Nigra	brain
24	chr2:98535600-98546000	Weak transcription	Brain Anterior Caudate	brain
25	chr2:98536600-98545200	Weak transcription	Psoas Muscle	Psoas
26	chr2:98536800-98545000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr2:98538600-98546000	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr2:98538800-98548200	Weak transcription	Gastric	stomach
29	chr2:98538800-98552400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr2:98539000-98551600	Weak transcription	A549	lung
31	chr2:98539200-98546000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr2:98539400-98545000	Weak transcription	Brain Germinal Matrix	brain
33	chr2:98541000-98546400	Weak transcription	Stomach Mucosa	stomach
34	chr2:98541200-98546000	Weak transcription	Spleen	Spleen
35	chr2:98541200-98552400	Weak transcription	Esophagus	oesophagus
36	chr2:98541400-98552200	Weak transcription	NHEK	skin
37	chr2:98541600-98550400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr2:98541600-98552400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr2:98541600-98552400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr2:98541600-98552400	Weak transcription	Aorta	Aorta
41	chr2:98541600-98552400	Weak transcription	Lung	lung
42	chr2:98541800-98547400	Weak transcription	Fetal Intestine Small	intestine
43	chr2:98541800-98552400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr2:98542000-98546000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr2:98542000-98546000	Weak transcription	Adipose Nuclei	Adipose
46	chr2:98542000-98546000	Weak transcription	Brain Inferior Temporal Lobe	brain
47	chr2:98542000-98546000	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr2:98542000-98546000	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr2:98542000-98547200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr2:98542000-98547200	Weak transcription	NHDF-Ad	bronchial

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