Variant report

Variant	rs569190499
Chromosome Location	chr10:50278390-50278391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50273046..50275272-chr10:50277935..50280006,2	MCF-7	breast:
2	chr10:50277084..50281077-chr10:50281316..50285114,4	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	esv2761593	chr10:50276812-50336129	Weak transcription Genic enhancers Flanking Active TSS Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3426176	chr10:50277296-50279294	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv6657	chr10:50277788-50278576	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3498730	chr10:50277887-50278392	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3499521	chr10:50277910-50278453	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3499520	chr10:50277911-50278414	Weak transcription Genic enhancers Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2845	chr10:50277982-50278589	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50222800-50279000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr10:50232400-50279200	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:50243800-50278800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:50247000-50282600	Weak transcription	Brain Angular Gyrus	brain
5	chr10:50254400-50278800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:50266600-50289400	Weak transcription	Colonic Mucosa	Colon
7	chr10:50266800-50278600	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:50267200-50288400	Weak transcription	NHLF	lung
9	chr10:50270600-50284200	Weak transcription	Fetal Intestine Large	intestine
10	chr10:50270800-50279600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr10:50271200-50279400	Weak transcription	Liver	Liver
12	chr10:50271600-50285200	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:50272000-50278800	Weak transcription	HSMMtube	muscle
14	chr10:50272200-50279200	Weak transcription	Adipose Nuclei	Adipose
15	chr10:50272200-50279600	Weak transcription	Fetal Intestine Small	intestine
16	chr10:50272200-50283200	Weak transcription	Brain Anterior Caudate	brain
17	chr10:50272400-50279800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:50272400-50283000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr10:50272600-50278600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:50272600-50279600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:50272600-50294200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr10:50273600-50279600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:50273600-50289800	Weak transcription	NHDF-Ad	bronchial
24	chr10:50273800-50278800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr10:50273800-50279000	Weak transcription	Aorta	Aorta
26	chr10:50274000-50279000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr10:50274200-50279800	Weak transcription	Fetal Lung	lung
28	chr10:50275600-50279200	Weak transcription	Fetal Brain Male	brain
29	chr10:50276200-50279000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr10:50276200-50280000	ZNF genes & repeats	Fetal Stomach	stomach
31	chr10:50276600-50288200	Weak transcription	Gastric	stomach
32	chr10:50276800-50279800	Genic enhancers	Fetal Muscle Trunk	muscle
33	chr10:50276800-50279800	Genic enhancers	Fetal Muscle Leg	muscle
34	chr10:50277200-50281800	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr10:50277400-50278600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr10:50277400-50278800	Weak transcription	Esophagus	oesophagus
37	chr10:50277400-50280000	Enhancers	Ovary	ovary
38	chr10:50277400-50284400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr10:50277600-50287200	Weak transcription	K562	blood
40	chr10:50277800-50278800	Weak transcription	Left Ventricle	heart
41	chr10:50277800-50278800	Weak transcription	Right Atrium	heart
42	chr10:50277800-50279400	Weak transcription	Lung	lung
43	chr10:50278000-50278400	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr10:50278200-50279000	Genic enhancers	Right Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links