Variant report

Variant	rs569221920
Chromosome Location	chr5:77937932-77937933
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:77932938..77939935-chr5:77942023..77946135,10	MCF-7	breast:
2	chr5:77936618..77938171-chr5:77943031..77945738,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARSB-3	chr5:77937833-77937985	NONHSAT102334

Variant related genes	Relation type
ENSG00000145685	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3522738	chr5:77434730-78063683	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3522739	chr5:77434730-78063683	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv949530	chr5:77830403-78477017	Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv830356	chr5:77847022-78011999	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1021768	chr5:77881915-78465489	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
6	esv2762527	chr5:77921199-78548196	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
7	esv1792242	chr5:77927033-77966625	Genic enhancers Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	esv1841124	chr5:77937453-77944988	Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv528833	chr5:77937453-78016860	Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:77928200-77942400	Weak transcription	Primary B cells from cord blood	blood
2	chr5:77930600-77938000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr5:77931000-77942800	Weak transcription	K562	blood
4	chr5:77932400-77938600	Enhancers	Fetal Intestine Large	intestine
5	chr5:77932800-77938200	Enhancers	HMEC	breast
6	chr5:77933800-77938000	Enhancers	Fetal Muscle Leg	muscle
7	chr5:77933800-77940600	Weak transcription	Placenta	Placenta
8	chr5:77933800-77941400	Weak transcription	Right Atrium	heart
9	chr5:77933800-77943200	Weak transcription	Esophagus	oesophagus
10	chr5:77934600-77940600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr5:77934600-77942400	Weak transcription	Colonic Mucosa	Colon
12	chr5:77935000-77938400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr5:77935200-77940400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr5:77935200-77942000	Weak transcription	Right Ventricle	heart
15	chr5:77935200-77942600	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr5:77935400-77942000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr5:77935400-77942600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr5:77936000-77942600	Weak transcription	Fetal Brain Female	brain
19	chr5:77936600-77939000	Enhancers	Duodenum Mucosa	Duodenum
20	chr5:77936600-77939000	Enhancers	Pancreas	Pancrea
21	chr5:77936800-77940400	Weak transcription	Brain Anterior Caudate	brain
22	chr5:77936800-77940600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:77936800-77940800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr5:77937000-77938200	Weak transcription	Thymus	Thymus
25	chr5:77937000-77939000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr5:77937000-77940400	Weak transcription	Hela-S3	cervix
27	chr5:77937000-77940600	Weak transcription	Aorta	Aorta
28	chr5:77937000-77942600	Weak transcription	Left Ventricle	heart
29	chr5:77937000-77942600	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr5:77937000-77943200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr5:77937000-77943200	Weak transcription	Psoas Muscle	Psoas
32	chr5:77937200-77938000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr5:77937200-77938000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr5:77937200-77938000	Weak transcription	Primary B cells from peripheral blood	blood
35	chr5:77937200-77938200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr5:77937200-77938200	Weak transcription	Fetal Thymus	thymus
37	chr5:77937200-77938400	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr5:77937200-77938400	Weak transcription	Fetal Stomach	stomach
39	chr5:77937200-77938600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr5:77937200-77938600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
41	chr5:77937200-77938600	Weak transcription	Lung	lung
42	chr5:77937200-77938600	Weak transcription	Ovary	ovary
43	chr5:77937200-77939400	Weak transcription	HUES48 Cell Line	embryonic stem cell
44	chr5:77937200-77940000	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr5:77937200-77940200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr5:77937200-77940200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr5:77937200-77940200	Weak transcription	Brain Substantia Nigra	brain
48	chr5:77937200-77940200	Weak transcription	Colon Smooth Muscle	Colon
49	chr5:77937200-77940200	Weak transcription	HSMMtube	muscle
50	chr5:77937200-77940400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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