Variant report

Variant	rs56923607
Chromosome Location	chr14:80162896-80162897
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs58702851	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73329945	1.00[AMR][1000 genomes]
rs73329968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73329973	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73329975	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73329978	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8020312	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045241	chr14:79885361-80734201	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1039622	chr14:79908702-80266601	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:80158000-80164400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:80160600-80170200	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr14:80161600-80175800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr14:80161800-80164200	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:80162000-80164400	Weak transcription	Fetal Kidney	kidney

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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