Variant report

Variant	rs569236890
Chromosome Location	chr11:67032817-67032818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:67032700..67034613-chr11:67124238..67125805,2	K562	blood:
2	chr11:67030856..67037366-chr11:67138319..67144892,13	MCF-7	breast:
3	chr11:67032309..67036659-chr11:67119174..67122793,5	MCF-7	breast:
4	chr11:66820570..66825355-chr11:67030338..67035766,7	MCF-7	breast:
5	chr11:67031980..67036845-chr11:67115804..67121447,10	MCF-7	breast:
6	chr11:67030751..67032989-chr11:67210893..67212752,2	K562	blood:
7	chr11:67029982..67035321-chr11:67120482..67125805,6	K562	blood:
8	chr11:67031846..67035344-chr11:67139453..67142374,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000175505	Chromatin interaction
ENSG00000172725	Chromatin interaction
ENSG00000256514	Chromatin interaction
ENSG00000173156	Chromatin interaction
ENSG00000175482	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
5	nsv897798	chr11:67024534-67065858	Transcr. at gene 5' and 3' Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
6	nsv897799	chr11:67024534-67072623	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
7	nsv897800	chr11:67024534-67086298	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
9	esv3419864	chr11:67031976-67036274	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67024400-67034000	Weak transcription	Small Intestine	intestine
2	chr11:67028600-67033600	Enhancers	HMEC	breast
3	chr11:67028800-67034000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:67028800-67034000	Enhancers	Esophagus	oesophagus
5	chr11:67029200-67033600	Weak transcription	Aorta	Aorta
6	chr11:67029200-67033600	Weak transcription	Psoas Muscle	Psoas
7	chr11:67029400-67033400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:67029400-67033400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr11:67029600-67033200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr11:67029800-67033600	Enhancers	Fetal Thymus	thymus
11	chr11:67029800-67034000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr11:67030200-67033200	Weak transcription	Ovary	ovary
13	chr11:67030400-67033200	Weak transcription	Fetal Brain Female	brain
14	chr11:67030400-67033400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr11:67030600-67033200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:67030600-67033400	Weak transcription	Brain Germinal Matrix	brain
17	chr11:67030600-67033400	Weak transcription	Brain Substantia Nigra	brain
18	chr11:67030600-67033400	Weak transcription	Fetal Kidney	kidney
19	chr11:67030600-67033600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr11:67030600-67034000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:67030800-67033000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr11:67030800-67033200	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr11:67030800-67033200	Weak transcription	Brain Anterior Caudate	brain
24	chr11:67030800-67033200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:67030800-67033200	Weak transcription	Fetal Heart	heart
26	chr11:67030800-67033200	Weak transcription	Fetal Intestine Large	intestine
27	chr11:67030800-67033200	Weak transcription	Fetal Lung	lung
28	chr11:67030800-67033200	Weak transcription	Fetal Stomach	stomach
29	chr11:67030800-67033200	Weak transcription	Right Ventricle	heart
30	chr11:67030800-67033200	Weak transcription	Stomach Mucosa	stomach
31	chr11:67030800-67033400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:67030800-67033400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr11:67030800-67033400	Weak transcription	A549	lung
34	chr11:67030800-67033600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr11:67030800-67033600	Weak transcription	Right Atrium	heart
36	chr11:67030800-67034000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr11:67031000-67033200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:67031000-67033200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr11:67031000-67033200	Weak transcription	Primary T helper cells fromperipheralblood	blood
40	chr11:67031000-67033200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr11:67031000-67033200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:67031000-67033200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:67031000-67033200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr11:67031000-67033200	Weak transcription	Brain Angular Gyrus	brain
45	chr11:67031000-67033200	Weak transcription	Brain Hippocampus Middle	brain
46	chr11:67031000-67033200	Weak transcription	Lung	lung
47	chr11:67031000-67033200	Weak transcription	Pancreas	Pancrea
48	chr11:67031000-67033200	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr11:67031000-67033200	Weak transcription	Thymus	Thymus
50	chr11:67031000-67033200	Weak transcription	K562	blood

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