Variant report

Variant	rs569245703
Chromosome Location	chr9:6523213-6523214
allele	-/TTC
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:6516849..6518888-chr9:6521453..6523458,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031086	chr9:5806949-6630686	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv539967	chr9:5806949-6630686	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv933124	chr9:6099101-6644738	Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv1029000	chr9:6188652-6687205	Enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
5	nsv1031459	chr9:6216913-6657192	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv948562	chr9:6222553-6684955	Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
7	nsv1032350	chr9:6328167-6630686	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv831497	chr9:6377501-6612402	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
9	nsv1029766	chr9:6437020-6523605	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
10	nsv892162	chr9:6480005-6788085	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
11	nsv831498	chr9:6496021-6689728	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
12	esv2761298	chr9:6505897-6544766	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
13	nsv934176	chr9:6517535-6644738	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
14	esv2761484	chr9:6518374-6527209	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv892163	chr9:6523056-6632061	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv1025627	chr9:6523056-6648098	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
17	esv2752308	chr9:6523060-6899149	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:6498800-6554400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr9:6499000-6528400	Weak transcription	Pancreas	Pancrea
3	chr9:6506400-6530600	Weak transcription	Gastric	stomach
4	chr9:6507000-6523800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr9:6507000-6524800	Weak transcription	Brain Hippocampus Middle	brain
6	chr9:6507000-6534400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr9:6508400-6523600	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr9:6508400-6525000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:6508400-6526400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:6508400-6526600	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr9:6508400-6528200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:6508400-6530600	Weak transcription	Left Ventricle	heart
13	chr9:6508600-6524200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr9:6508600-6537800	Weak transcription	HMEC	breast
15	chr9:6508600-6538200	Weak transcription	NHEK	skin
16	chr9:6508800-6523800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr9:6508800-6526600	Weak transcription	HSMM	muscle
18	chr9:6509800-6525000	Weak transcription	Osteobl	bone
19	chr9:6509800-6530200	Weak transcription	A549	lung
20	chr9:6510400-6558800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr9:6510600-6525000	Weak transcription	NH-A	brain
22	chr9:6510600-6543000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr9:6511400-6526800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr9:6512200-6525000	Weak transcription	HSMMtube	muscle
25	chr9:6512200-6528800	Weak transcription	NHLF	lung
26	chr9:6517600-6528000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr9:6518000-6526000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:6518000-6530400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:6518200-6526000	Weak transcription	Fetal Thymus	thymus
30	chr9:6518400-6525000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:6521600-6524000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:6521600-6524200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:6521800-6523600	Strong transcription	HUVEC	blood vessel
34	chr9:6522000-6525000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr9:6522000-6528400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr9:6522000-6549200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr9:6522200-6525000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr9:6522400-6530400	Weak transcription	NHDF-Ad	bronchial
39	chr9:6522400-6531600	Weak transcription	GM12878-XiMat	blood
40	chr9:6522600-6523800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
41	chr9:6522600-6525400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr9:6522600-6526000	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr9:6522800-6523400	ZNF genes & repeats	Aorta	Aorta
44	chr9:6522800-6523800	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr9:6523000-6523600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr9:6523000-6524600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr9:6523000-6524600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr9:6523000-6525000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr9:6523000-6525400	Weak transcription	Fetal Brain Female	brain
50	chr9:6523000-6538400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links