Variant report

Variant	rs56927235
Chromosome Location	chr2:37866045-37866046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37859378..37862018-chr2:37863759..37867582,3	K562	blood:
2	chr2:37865948..37868247-chr2:37870789..37872523,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-QPCT-3	chr2:37832379-37870742	NONHSAT070127

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs59815294	1.00[AMR][1000 genomes]
rs72878891	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456374	chr2:37669487-37868214	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv470453	chr2:37669487-37868214	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv581473	chr2:37669487-37868214	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2757793	chr2:37796654-38138939	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	esv2759043	chr2:37796654-38138939	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv833825	chr2:37808169-37985917	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	nsv535645	chr2:37853282-37972640	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	nsv535646	chr2:37853282-38014428	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37853600-37873200	Weak transcription	Liver	Liver
2	chr2:37853600-37897400	Weak transcription	Small Intestine	intestine
3	chr2:37857000-37871400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr2:37857200-37868200	Weak transcription	Psoas Muscle	Psoas
5	chr2:37858000-37868600	Weak transcription	A549	lung
6	chr2:37858400-37867600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr2:37858800-37871400	Weak transcription	Aorta	Aorta
8	chr2:37859000-37868600	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr2:37859200-37868600	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr2:37860000-37871200	Weak transcription	Gastric	stomach
11	chr2:37860200-37866800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr2:37860200-37868600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr2:37860400-37867400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr2:37860800-37867000	Weak transcription	NHLF	lung
15	chr2:37860800-37873000	Weak transcription	Pancreas	Pancrea
16	chr2:37860800-37879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr2:37861000-37868000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr2:37861800-37866200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr2:37862000-37866600	Enhancers	HSMM	muscle
20	chr2:37862000-37867000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr2:37862000-37869400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr2:37862200-37866800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr2:37862200-37867000	Enhancers	Muscle Satellite Cultured Cells	--
24	chr2:37862200-37867200	Enhancers	NHDF-Ad	bronchial
25	chr2:37862200-37870600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr2:37862400-37869200	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr2:37862400-37870200	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr2:37862800-37869400	Weak transcription	HUVEC	blood vessel
29	chr2:37863200-37868200	Weak transcription	Right Atrium	heart
30	chr2:37863400-37868000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr2:37863400-37868200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr2:37863400-37875000	Weak transcription	Duodenum Mucosa	Duodenum
33	chr2:37863600-37866600	Enhancers	HSMMtube	muscle
34	chr2:37863600-37867000	Weak transcription	NH-A	brain
35	chr2:37863600-37868200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr2:37863600-37868200	Weak transcription	HMEC	breast
37	chr2:37863600-37868400	Weak transcription	NHEK	skin
38	chr2:37863600-37868800	Weak transcription	Fetal Brain Female	brain
39	chr2:37863600-37871400	Weak transcription	Lung	lung
40	chr2:37863600-37873000	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr2:37864200-37868200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr2:37864200-37868200	Weak transcription	Fetal Muscle Leg	muscle
43	chr2:37864200-37868600	Weak transcription	Right Ventricle	heart
44	chr2:37864200-37870200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr2:37864200-37871200	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr2:37864200-37871200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr2:37864200-37871400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr2:37864200-37871400	Weak transcription	Spleen	Spleen
49	chr2:37864200-37880200	Weak transcription	H9 Cell Line	embryonic stem cell
50	chr2:37864400-37866200	Weak transcription	GM12878-XiMat	blood

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