Variant report

Variant	rs569274309
Chromosome Location	chr6:11711668-11711669
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11710777..11713015-chr6:11730009..11731518,2	K562	blood:
2	chr6:11710372..11713269-chr6:11723329..11725416,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv462637	chr6:11710554-11733777	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv600990	chr6:11710554-11733777	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11701800-11713000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:11703600-11712600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:11704200-11714800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:11705800-11712000	Weak transcription	Adipose Nuclei	Adipose
5	chr6:11706600-11712000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:11708200-11714800	Enhancers	Primary T cells fromperipheralblood	blood
7	chr6:11708400-11716800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr6:11709000-11714800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:11709000-11715800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr6:11709000-11716400	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr6:11709800-11716400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:11710000-11712200	Enhancers	Fetal Stomach	stomach
13	chr6:11710000-11715200	Enhancers	Fetal Thymus	thymus
14	chr6:11710200-11711800	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr6:11710400-11711800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
16	chr6:11710400-11711800	Enhancers	Fetal Heart	heart
17	chr6:11710400-11711800	Enhancers	Fetal Kidney	kidney
18	chr6:11710400-11712200	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr6:11710400-11712800	Enhancers	NHEK	skin
20	chr6:11710400-11713200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:11710400-11713400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr6:11710400-11713400	Enhancers	Spleen	Spleen
23	chr6:11710400-11713600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr6:11710600-11712800	Enhancers	Fetal Lung	lung
25	chr6:11710600-11713200	Enhancers	HMEC	breast
26	chr6:11710800-11711800	Flanking Active TSS	Fetal Muscle Trunk	muscle
27	chr6:11710800-11711800	Flanking Active TSS	Fetal Muscle Leg	muscle
28	chr6:11710800-11712200	Enhancers	Brain Hippocampus Middle	brain
29	chr6:11710800-11712600	Enhancers	Esophagus	oesophagus
30	chr6:11710800-11712800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr6:11710800-11713600	Enhancers	NHLF	lung
32	chr6:11710800-11731000	Weak transcription	Gastric	stomach
33	chr6:11711000-11711800	Enhancers	Primary T cells from cord blood	blood
34	chr6:11711000-11712000	Flanking Active TSS	Fetal Brain Female	brain
35	chr6:11711000-11712000	Flanking Active TSS	HSMMtube	muscle
36	chr6:11711000-11712200	Enhancers	Fetal Brain Male	brain
37	chr6:11711000-11712200	Enhancers	NH-A	brain
38	chr6:11711000-11712800	Enhancers	Right Atrium	heart
39	chr6:11711200-11711800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr6:11711200-11711800	Enhancers	Primary T killer memory cells from peripheral blood	blood
41	chr6:11711200-11711800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr6:11711200-11711800	Enhancers	Placenta	Placenta
43	chr6:11711200-11712000	Flanking Active TSS	Stomach Smooth Muscle	stomach
44	chr6:11711200-11713000	Enhancers	NHDF-Ad	bronchial
45	chr6:11711200-11715400	Flanking Active TSS	GM12878-XiMat	blood
46	chr6:11711200-11731000	Weak transcription	Fetal Intestine Small	intestine
47	chr6:11711400-11711800	Active TSS	Duodenum Smooth Muscle	Duodenum
48	chr6:11711400-11711800	Flanking Active TSS	Osteobl	bone
49	chr6:11711400-11712000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
50	chr6:11711400-11712000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle

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