Variant report

Variant	rs569292667
Chromosome Location	chr10:118764630-118764631
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:118764194..118765108-chr13:45010482..45011319,2	HCT-116	colon:
2	chr10:118745589..118747161-chr10:118762227..118764656,2	K562	blood:
3	chr10:118764394..118765195-chr11:62608626..62609723,3	Hela-S3	cervix:
4	chr10:118706892..118708756-chr10:118762371..118764787,2	MCF-7	breast:
5	chr10:118764190..118764920-chr16:30669483..30670147,2	Hela-S3	cervix:
6	chr1:235491265..235492225-chr10:118764585..118765416,2	Hela-S3	cervix:
7	chr10:118763945..118764733-chrX:41192261..41193087,2	Hela-S3	cervix:
8	chr10:118764032..118764927-chr11:73693828..73694388,2	Hela-S3	cervix:
9	chr10:118762279..118764768-chr10:118773553..118775588,2	MCF-7	breast:
10	chr10:118764043..118764699-chr8:145022982..145023924,2	Hela-S3	cervix:
11	chr1:153962904..153963422-chr10:118763947..118764722,2	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000175567	Chromatin interaction
ENSG00000102804	Chromatin interaction
ENSG00000215301	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000152904	Chromatin interaction
ENSG00000177954	Chromatin interaction
ENSG00000054267	Chromatin interaction
ENSG00000156860	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755506	chr10:118748764-118800107	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
2	esv3525989	chr10:118764562-118770560	Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118760400-118765200	Active TSS	Brain Cingulate Gyrus	brain
2	chr10:118760800-118765200	Active TSS	Brain Anterior Caudate	brain
3	chr10:118761000-118765200	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr10:118761000-118765200	Active TSS	Brain Substantia Nigra	brain
5	chr10:118761400-118765600	Active TSS	Brain Angular Gyrus	brain
6	chr10:118762000-118765200	Active TSS	Brain Hippocampus Middle	brain
7	chr10:118762800-118765200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:118763200-118765200	Active TSS	K562	blood
9	chr10:118763400-118766200	Active TSS	A549	lung
10	chr10:118763600-118765400	Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr10:118763600-118765400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:118763600-118765600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:118763600-118765600	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr10:118763600-118766200	Active TSS	ES-I3 Cell Line	embryonic stem cell
15	chr10:118763800-118764800	Active TSS	Rectal Smooth Muscle	rectum
16	chr10:118763800-118764800	Active TSS	Stomach Smooth Muscle	stomach
17	chr10:118763800-118765000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:118763800-118765000	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr10:118763800-118765000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr10:118763800-118765000	Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr10:118763800-118765000	Active TSS	Stomach Mucosa	stomach
22	chr10:118763800-118765000	Active TSS	NH-A	brain
23	chr10:118763800-118765200	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
24	chr10:118763800-118765200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr10:118763800-118765200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:118763800-118765200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr10:118763800-118765200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr10:118763800-118765200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr10:118763800-118765200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
30	chr10:118763800-118765200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr10:118763800-118765200	Active TSS	Aorta	Aorta
32	chr10:118763800-118765200	Active TSS	Fetal Intestine Large	intestine
33	chr10:118763800-118765200	Active TSS	Pancreas	Pancrea
34	chr10:118763800-118765200	Active TSS	NHDF-Ad	bronchial
35	chr10:118763800-118765400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
36	chr10:118763800-118765400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr10:118763800-118765400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr10:118763800-118765400	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr10:118763800-118765400	Flanking Active TSS	Primary hematopoietic stem cells	blood
40	chr10:118763800-118765400	Active TSS	Fetal Kidney	kidney
41	chr10:118763800-118765400	Active TSS	HSMMtube	muscle
42	chr10:118763800-118765400	Bivalent/Poised TSS	Osteobl	bone
43	chr10:118763800-118765600	Active TSS	H9 Cell Line	embryonic stem cell
44	chr10:118763800-118765600	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:118763800-118765600	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr10:118763800-118765600	Active TSS	HSMM	muscle
47	chr10:118764000-118764800	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
48	chr10:118764000-118764800	Bivalent/Poised TSS	Brain Germinal Matrix	brain
49	chr10:118764000-118764800	Active TSS	Skeletal Muscle Female	skeletal muscle
50	chr10:118764000-118764800	Active TSS	Monocytes-CD14+_RO01746	blood

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