Variant report

Variant	rs56929311
Chromosome Location	chr13:50641608-50641609
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:50640517..50642548-chr13:50652959..50655248,2	K562	blood:
2	chr13:50638410..50642177-chr13:50643409..50648630,6	K562	blood:
3	chr13:50640962..50642807-chr13:50646413..50649887,3	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs59609469	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035151	chr13:50513535-51167850	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1254 gene(s)	inside rSNPs	diseases
2	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
4	esv2752608	chr13:50550099-51054499	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1249 gene(s)	inside rSNPs	diseases
5	nsv1054415	chr13:50598121-50650938	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1202 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:50578800-50654400	Weak transcription	Esophagus	oesophagus
2	chr13:50586800-50654200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr13:50587000-50645600	Weak transcription	Spleen	Spleen
4	chr13:50588000-50645600	Weak transcription	Ovary	ovary
5	chr13:50589800-50645600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr13:50590200-50653600	Weak transcription	Small Intestine	intestine
7	chr13:50594800-50643200	Weak transcription	Brain Hippocampus Middle	brain
8	chr13:50594800-50643600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr13:50595000-50654200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr13:50595800-50654400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr13:50598600-50650200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr13:50611800-50646400	Strong transcription	Fetal Thymus	thymus
13	chr13:50612400-50643000	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr13:50612600-50644200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr13:50612800-50645400	Weak transcription	HSMMtube	muscle
16	chr13:50614000-50643800	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr13:50615200-50643200	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr13:50616000-50653600	Weak transcription	Fetal Kidney	kidney
19	chr13:50617400-50650000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr13:50617400-50654200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr13:50621400-50645600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr13:50622600-50653400	Weak transcription	Fetal Brain Male	brain
23	chr13:50622800-50653400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr13:50623400-50645600	Weak transcription	Stomach Smooth Muscle	stomach
25	chr13:50624400-50654200	Weak transcription	Pancreas	Pancrea
26	chr13:50625400-50654200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr13:50625600-50649000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr13:50626600-50654000	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr13:50628400-50652400	Weak transcription	Psoas Muscle	Psoas
30	chr13:50630000-50651000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr13:50630600-50645600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr13:50630800-50645400	Weak transcription	Brain Anterior Caudate	brain
33	chr13:50631200-50645200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr13:50631200-50646200	Strong transcription	Primary B cells from peripheral blood	blood
35	chr13:50631800-50645400	Weak transcription	Brain Cingulate Gyrus	brain
36	chr13:50633000-50653600	Weak transcription	Fetal Stomach	stomach
37	chr13:50633400-50642400	Weak transcription	Gastric	stomach
38	chr13:50633400-50652200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr13:50634600-50642800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr13:50634800-50642800	Weak transcription	Brain Substantia Nigra	brain
41	chr13:50634800-50644000	Weak transcription	Aorta	Aorta
42	chr13:50635000-50643400	Weak transcription	A549	lung
43	chr13:50635000-50645000	Weak transcription	Brain Germinal Matrix	brain
44	chr13:50635200-50643400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr13:50636000-50642400	Strong transcription	Osteobl	bone
46	chr13:50636800-50643600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr13:50637000-50645600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr13:50637200-50642600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr13:50637200-50642600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr13:50637200-50643200	Strong transcription	HSMM	muscle

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