Variant report
| Variant | rs569308319 |
|---|---|
| Chromosome Location | chr6:126964620-126964621 |
| allele | -/GGCGGC |
| Outlinks | Ensembl UCSC |
- TF binding region (count:11)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:11 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | TAF1 | chr6:126964553-126964792 | HepG2 | liver: | n/a | n/a |
| 2 | USF1 | chr6:126964560-126964626 | GM12878 | blood: | n/a | n/a |
| 3 | POLR2A | chr6:126964516-126964822 | MCF-7 | breast: | n/a | n/a |
| 4 | POLR2A | chr6:126964449-126964863 | A549 | lung: | n/a | n/a |
| 5 | GABPA | chr6:126964561-126964667 | HepG2 | liver: | n/a | n/a |
| 6 | POLR2A | chr6:126964563-126964670 | GM12878 | blood: | n/a | n/a |
| 7 | POLR2A | chr6:126964576-126964682 | A549 | lung: | n/a | n/a |
| 8 | GABPA | chr6:126964566-126964666 | HepG2 | liver: | n/a | n/a |
| 9 | TAF1 | chr6:126964537-126964841 | HepG2 | liver: | n/a | n/a |
| 10 | POLR2A | chr6:126964568-126964664 | A549 | lung: | n/a | n/a |
| 11 | POLR2A | chr6:126964580-126964688 | A549 | lung: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| PRELID1P1 | TF binding region |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1021636 | chr6:126792916-127022489 | Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv1026498 | chr6:126812609-127397240 | Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 3 | nsv1024206 | chr6:126873187-127475713 | Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 4 | nsv538438 | chr6:126873187-127475713 | Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 5 | nsv830797 | chr6:126923875-127100956 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 6 | nsv886637 | chr6:126927717-126985351 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 7 | nsv970163 | chr6:126963994-126967239 | Enhancers | TF binding regionCpG island | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
