Variant report

Variant	rs569308541
Chromosome Location	chr11:127546184-127546185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898445	chr11:127377733-127713173	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1043894	chr11:127423435-127637119	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv541202	chr11:127423435-127637119	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1035919	chr11:127500933-127561596	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv541203	chr11:127500933-127561596	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1050596	chr11:127528390-127608257	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv826124	chr11:127545193-127580415	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:127545000-127549400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr11:127545200-127546200	Enhancers	Adipose Nuclei	Adipose
3	chr11:127545200-127546200	Enhancers	Brain Hippocampus Middle	brain
4	chr11:127545200-127546200	Enhancers	Fetal Intestine Small	intestine
5	chr11:127545200-127546400	Enhancers	Psoas Muscle	Psoas
6	chr11:127545200-127547400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr11:127545400-127546200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:127545400-127546200	Enhancers	Duodenum Mucosa	Duodenum
9	chr11:127545400-127546200	Enhancers	Fetal Lung	lung
10	chr11:127545400-127546400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr11:127545400-127547600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:127545600-127546200	Enhancers	Brain Anterior Caudate	brain
13	chr11:127545800-127547400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr11:127546000-127546200	Enhancers	Fetal Brain Male	brain
15	chr11:127546000-127546200	Enhancers	Fetal Heart	heart
16	chr11:127546000-127547200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:127546000-127547200	Weak transcription	Spleen	Spleen
18	chr11:127546000-127547400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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