Variant report

Variant	rs569328819
Chromosome Location	chr21:15587828-15587829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr21:15587812-15587862	SAEC	small airway:	n/a
2	chr21:15587812-15587862	HRE	kidney:	n/a
3	chr21:15587812-15587862	SKMC	muscle:	n/a
4	chr21:15587812-15587862	H1-hESC	embryonic stem cell:	embryo
5	chr21:15587812-15587862	AG09309	skin:	n/a
6	chr21:15587812-15587862	BE2_C	brain:	n/a
7	chr21:15587812-15587862	GM19239	blood:	n/a
8	chr21:15587812-15587862	AoSMC	blood vessel:	n/a
9	chr21:15587812-15587862	IMR90	lung:	fetal
10	chr21:15587812-15587862	GM12878	blood:	n/a
11	chr21:15587812-15587862	AG10803	skin:	n/a
12	chr21:15587812-15587862	T-47D	breast:	n/a
13	chr21:15587812-15587862	AG09319	gingival:	n/a
14	chr21:15587812-15587862	NHBE	bronchial:	n/a
15	chr21:15587812-15587862	HEEpiC	esophagus:	n/a
16	chr21:15587812-15587862	LNCaP	prostate:	n/a
17	chr21:15587812-15587862	NB4	blood:	n/a
18	chr21:15587812-15587862	Hepatocyte	liver:	n/a
19	chr21:15587812-15587862	HL-60	blood:	n/a
20	chr21:15587812-15587862	CMK	blood:	n/a
21	chr21:15587812-15587862	PANC-1	pancreas:	n/a
22	chr21:15587812-15587862	ECC-1	luminal epithelium:	n/a
23	chr21:15587812-15587862	AG04450	lung:	fetal
24	chr21:15587812-15587862	GM06990	blood:	n/a
25	chr21:15587812-15587862	HRCEpiC	kidney:	n/a
26	chr21:15587812-15587862	NT2-D1	testis:	n/a
27	chr21:15587812-15587862	RPTEC	kidney:	n/a
28	chr21:15587812-15587862	ovcar-3	ovarian:	n/a
29	chr21:15587812-15587862	HCPEpiC	choroid plexus:	n/a
30	chr21:15587812-15587862	K562	blood:	n/a
31	chr21:15587812-15587862	HMEC	breast:	n/a
32	chr21:15587812-15587862	HRPEpiC	eye:	n/a
33	chr21:15587812-15587862	GM12892	blood:	n/a
34	chr21:15587812-15587862	SK-N-MC	brain:	n/a
35	chr21:15587812-15587862	Jurkat	blood:	n/a
36	chr21:15587812-15587862	NHDF-neo	bronchial:	n/a
37	chr21:15587812-15587862	SK-N-SH	brain:	n/a
38	chr21:15587812-15587862	HepG2	liver:	n/a
39	chr21:15587812-15587862	SK-N-SH_RA	brain:	n/a
40	chr21:15587812-15587862	HIPEpiC	eye:	n/a
41	chr21:15587812-15587862	BJ	skin:	n/a
42	chr21:15587812-15587862	HNPCEpiC	eye:	n/a
43	chr21:15587812-15587862	HCM	heart:	n/a
44	chr21:15587812-15587862	PrEC	prostate:	n/a
45	chr21:15587812-15587862	MCF10A-Er-Src	breast:	n/a
46	chr21:15587812-15587862	Hela-S3	cervix:	n/a
47	chr21:15587812-15587862	Caco-2	colon:	n/a
48	chr21:15587812-15587862	MCF-7	breast:	n/a
49	chr21:15587812-15587862	HUVEC	blood vessel:	n/a
50	chr21:15587812-15587862	GM12891	blood:	n/a

No data

Variant related genes	Relation type
LIPI	CpG island
RBM11	CpG island

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058202	chr21:14706767-15628668	Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	nsv869466	chr21:15482572-15683385	Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv913402	chr21:15545350-15606128	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1056588	chr21:15583231-15615520	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1066738	chr21:15587815-15642948	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15587800-15588000	Bivalent/Poised TSS	Primary B cells from cord blood	blood
2	chr21:15587800-15588000	Enhancers	Primary T helper cells PMA-I stimulated	--
3	chr21:15587800-15588000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr21:15587800-15588200	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr21:15587800-15588200	Active TSS	Right Ventricle	heart
6	chr21:15587800-15588800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr21:15587800-15589600	Active TSS	Duodenum Smooth Muscle	Duodenum

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