Variant report

Variant	rs569332965
Chromosome Location	chr4:110468891-110468892
allele	-/ATTAGTCTA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:110466638..110469623-chr4:110471525..110474014,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461613	chr4:109922064-110593460	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv595129	chr4:109922064-110593460	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv3349784	chr4:110348873-110723163	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv980240	chr4:110467259-110476042	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:110393800-110469200	Weak transcription	Stomach Mucosa	stomach
2	chr4:110412400-110470600	Strong transcription	Fetal Thymus	thymus
3	chr4:110423400-110480800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr4:110434800-110469600	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr4:110448800-110479600	Weak transcription	Small Intestine	intestine
6	chr4:110448800-110480000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:110449600-110469400	Weak transcription	Pancreas	Pancrea
8	chr4:110452000-110470200	Weak transcription	Esophagus	oesophagus
9	chr4:110452400-110480800	Weak transcription	Right Ventricle	heart
10	chr4:110454000-110480600	Weak transcription	NHLF	lung
11	chr4:110454600-110480200	Weak transcription	A549	lung
12	chr4:110455000-110470800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr4:110455400-110469400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:110455400-110469800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:110455600-110480600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr4:110456200-110470800	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr4:110456400-110469000	Weak transcription	HMEC	breast
18	chr4:110456400-110469400	Weak transcription	Brain Angular Gyrus	brain
19	chr4:110456400-110472000	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr4:110456400-110480600	Weak transcription	Brain Substantia Nigra	brain
21	chr4:110456400-110481600	Weak transcription	Fetal Heart	heart
22	chr4:110456600-110469600	Weak transcription	Lung	lung
23	chr4:110457400-110480600	Weak transcription	Right Atrium	heart
24	chr4:110458400-110469000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:110458800-110469600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr4:110460200-110480800	Weak transcription	Brain Anterior Caudate	brain
27	chr4:110461000-110480600	Weak transcription	HSMMtube	muscle
28	chr4:110461200-110471000	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr4:110461200-110479600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr4:110461600-110470400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr4:110462000-110469400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr4:110462000-110469400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr4:110462000-110478400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:110462400-110474400	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr4:110462600-110469600	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr4:110462600-110479600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr4:110462800-110480800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr4:110463000-110469400	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr4:110463200-110469200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr4:110463200-110469200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr4:110463200-110470000	Weak transcription	Fetal Intestine Small	intestine
42	chr4:110463200-110480800	Weak transcription	Colonic Mucosa	Colon
43	chr4:110463800-110469000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:110464000-110469400	Weak transcription	Primary T helper cells PMA-I stimulated	--
45	chr4:110464000-110476200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr4:110464400-110478800	Weak transcription	Dnd41	blood
47	chr4:110464600-110469400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr4:110464600-110471800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr4:110464600-110473800	Weak transcription	Fetal Kidney	kidney
50	chr4:110464600-110476000	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links