Variant report

Variant	rs569338645
Chromosome Location	chr1:93975168-93975169
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011853	chr1:93966450-94039005	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv946083	chr1:93975114-93983709	ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93956400-93975200	Weak transcription	Fetal Stomach	stomach
2	chr1:93958000-93997200	Weak transcription	HSMMtube	muscle
3	chr1:93958800-93991800	Weak transcription	Gastric	stomach
4	chr1:93961000-93988400	Weak transcription	HUVEC	blood vessel
5	chr1:93962600-93984200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:93964600-93990200	Weak transcription	HSMM	muscle
7	chr1:93964600-94015200	Weak transcription	Fetal Brain Male	brain
8	chr1:93965000-94013200	Weak transcription	Adipose Nuclei	Adipose
9	chr1:93965000-94017400	Weak transcription	Stomach Mucosa	stomach
10	chr1:93965200-93984600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:93965200-93984800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:93965400-93983600	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr1:93966000-93975200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr1:93967400-93984200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr1:93968600-93976800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:93968600-93984400	Weak transcription	NHEK	skin
17	chr1:93971800-93975400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr1:93971800-93975600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
19	chr1:93971800-93975600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr1:93972200-93993800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr1:93972400-93977000	Weak transcription	Lung	lung
22	chr1:93972800-93975400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr1:93973000-93975400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr1:93973000-93975400	Strong transcription	Cortex derived primary cultured neurospheres	brain
25	chr1:93973200-93975400	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
26	chr1:93973200-94016800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr1:93973400-94032000	Weak transcription	Esophagus	oesophagus
28	chr1:93973800-93975400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
29	chr1:93973800-93975400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
30	chr1:93974000-93975200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
31	chr1:93974000-93975200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
32	chr1:93974000-93985000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr1:93974200-93975400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr1:93974200-93975400	Strong transcription	Fetal Muscle Trunk	muscle
35	chr1:93974400-93975200	ZNF genes & repeats	Fetal Lung	lung
36	chr1:93974400-93975400	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
37	chr1:93974400-93975400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
38	chr1:93974400-93975400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr1:93974400-93975400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr1:93974400-93975400	Strong transcription	Fetal Brain Female	brain
41	chr1:93974400-93975600	ZNF genes & repeats	Fetal Intestine Large	intestine
42	chr1:93974600-93975200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr1:93974600-93975200	ZNF genes & repeats	Dnd41	blood
44	chr1:93974600-93975400	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr1:93974600-93975400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr1:93974600-93975400	ZNF genes & repeats	Brain Germinal Matrix	brain
47	chr1:93974600-93975400	Enhancers	Placenta	Placenta
48	chr1:93974800-93975200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
49	chr1:93974800-93975200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr1:93974800-93975200	Enhancers	HepG2	liver

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