Variant report

Variant	rs56934493
Chromosome Location	chr2:189733384-189733385
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs10048793	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10170845	1.00[EUR][1000 genomes]
rs10177387	0.98[AFR][1000 genomes]
rs10185102	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10194182	0.98[AFR][1000 genomes]
rs10196959	0.83[AFR][1000 genomes]
rs10207990	0.98[AFR][1000 genomes]
rs10445725	1.00[EUR][1000 genomes]
rs10445726	1.00[EUR][1000 genomes]
rs11674580	0.96[EUR][1000 genomes]
rs11676244	0.96[EUR][1000 genomes]
rs11678718	0.96[EUR][1000 genomes]
rs11681365	0.96[EUR][1000 genomes]
rs11682895	0.96[EUR][1000 genomes]
rs11684224	0.96[EUR][1000 genomes]
rs11687872	0.96[EUR][1000 genomes]
rs11695250	0.92[EUR][1000 genomes]
rs11695327	0.96[EUR][1000 genomes]
rs13397537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13410823	0.95[AFR][1000 genomes]
rs34587834	0.96[EUR][1000 genomes]
rs57351486	0.96[EUR][1000 genomes]
rs57832802	0.96[EUR][1000 genomes]
rs58108785	0.96[EUR][1000 genomes]
rs58210062	0.96[EUR][1000 genomes]
rs60162413	0.96[EUR][1000 genomes]
rs60307701	0.96[EUR][1000 genomes]
rs60514585	0.96[EUR][1000 genomes]
rs60602630	0.96[EUR][1000 genomes]
rs60608780	0.96[EUR][1000 genomes]
rs60916684	0.96[EUR][1000 genomes]
rs61011178	0.96[EUR][1000 genomes]
rs6434300	0.95[AFR][1000 genomes]
rs6709783	0.95[AFR][1000 genomes]
rs6710225	0.95[AFR][1000 genomes]
rs6746832	0.95[AFR][1000 genomes]
rs6752196	0.95[AFR][1000 genomes]
rs6760322	0.95[AFR][1000 genomes]
rs72902633	0.96[EUR][1000 genomes]
rs72902639	0.96[EUR][1000 genomes]
rs72902642	0.96[EUR][1000 genomes]
rs72902649	0.96[EUR][1000 genomes]
rs72902655	0.96[EUR][1000 genomes]
rs72902678	0.96[EUR][1000 genomes]
rs72902691	0.96[EUR][1000 genomes]
rs72904650	0.96[EUR][1000 genomes]
rs72904664	0.96[EUR][1000 genomes]
rs72904665	0.96[EUR][1000 genomes]
rs72904686	0.96[EUR][1000 genomes]
rs72904689	0.96[EUR][1000 genomes]
rs72904690	0.96[EUR][1000 genomes]
rs72904691	0.96[EUR][1000 genomes]
rs72904695	0.96[EUR][1000 genomes]
rs72904696	0.96[EUR][1000 genomes]
rs72904698	0.96[EUR][1000 genomes]
rs72904701	0.96[EUR][1000 genomes]
rs72904702	0.96[EUR][1000 genomes]
rs72906605	0.96[EUR][1000 genomes]
rs72906607	0.96[EUR][1000 genomes]
rs72906611	0.96[EUR][1000 genomes]
rs72906616	0.96[EUR][1000 genomes]
rs72906620	0.96[EUR][1000 genomes]
rs72906621	0.96[EUR][1000 genomes]
rs72906631	0.96[EUR][1000 genomes]
rs72906633	0.96[EUR][1000 genomes]
rs72906638	0.96[EUR][1000 genomes]
rs72906640	0.96[EUR][1000 genomes]
rs72906643	0.96[EUR][1000 genomes]
rs72906646	0.96[EUR][1000 genomes]
rs72906655	0.96[EUR][1000 genomes]
rs72906657	0.96[EUR][1000 genomes]
rs72906662	0.96[EUR][1000 genomes]
rs72906664	0.96[EUR][1000 genomes]
rs72906691	0.96[EUR][1000 genomes]
rs72906692	0.96[EUR][1000 genomes]
rs72906695	0.96[EUR][1000 genomes]
rs72906698	0.96[EUR][1000 genomes]
rs72908623	1.00[EUR][1000 genomes]
rs72908644	1.00[EUR][1000 genomes]
rs72908645	1.00[EUR][1000 genomes]
rs72908648	1.00[EUR][1000 genomes]
rs72908650	1.00[EUR][1000 genomes]
rs72908658	1.00[EUR][1000 genomes]
rs72908661	1.00[EUR][1000 genomes]
rs72908663	0.96[EUR][1000 genomes]
rs7565039	0.96[EUR][1000 genomes]
rs7566920	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7593672	0.98[AFR][1000 genomes]
rs7593834	0.98[AFR][1000 genomes]
rs7603795	0.95[AFR][1000 genomes]
rs7607507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9288161	0.98[AFR][1000 genomes]
rs972470	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1008847	chr2:189603961-189769705	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv997454	chr2:189615728-189770133	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1002175	chr2:189615728-189776301	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv834490	chr2:189703550-189840963	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv4236	chr2:189730546-189740139	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189728600-189734200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr2:189732200-189733600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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