Variant report

Variant	rs56937414
Chromosome Location	chr15:45743352-45743353
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45740795..45743926-chr15:45878461..45880935,3	MCF-7	breast:
2	chr15:45693029..45695760-chr15:45741637..45746369,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171763	Chromatin interaction
ENSG00000171766	Chromatin interaction
ENSG00000260170	Chromatin interaction
ENSG00000104164	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10152337	0.93[ASN][1000 genomes]
rs10152697	0.93[ASN][1000 genomes]
rs10851425	0.99[EUR][1000 genomes]
rs12324848	0.93[ASN][1000 genomes]
rs1288852	0.94[EUR][1000 genomes]
rs1288861	0.96[ASN][1000 genomes]
rs1288863	0.99[EUR][1000 genomes]
rs1288865	0.98[EUR][1000 genomes]
rs16942066	0.85[ASN][1000 genomes]
rs1706799	0.83[ASN][1000 genomes]
rs17533716	0.83[ASN][1000 genomes]
rs17535381	0.93[ASN][1000 genomes]
rs17537244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17618294	0.93[ASN][1000 genomes]
rs2433602	0.96[ASN][1000 genomes]
rs2453518	0.94[EUR][1000 genomes]
rs2453546	0.96[ASN][1000 genomes]
rs2461706	0.96[ASN][1000 genomes]
rs2486287	0.96[ASN][1000 genomes]
rs2668746	0.80[ASN][1000 genomes]
rs55721266	0.93[ASN][1000 genomes]
rs55904415	0.93[ASN][1000 genomes]
rs56267974	0.96[ASN][1000 genomes]
rs56273246	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56306977	0.96[ASN][1000 genomes]
rs56327050	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56967490	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57369693	0.93[ASN][1000 genomes]
rs57419781	0.93[ASN][1000 genomes]
rs61301536	0.96[ASN][1000 genomes]
rs72709081	0.85[ASN][1000 genomes]
rs72709084	0.85[ASN][1000 genomes]
rs72709088	0.93[ASN][1000 genomes]
rs72711253	0.96[ASN][1000 genomes]
rs72711255	0.96[ASN][1000 genomes]
rs72711259	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9972405	0.93[ASN][1000 genomes]
rs9972498	0.93[ASN][1000 genomes]
rs9972528	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
2	nsv932147	chr15:45319178-45872076	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv569315	chr15:45446156-45772448	Flanking Active TSS Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
4	nsv469721	chr15:45608881-45788002	Strong transcription Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
5	nsv482380	chr15:45608881-45788002	Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
6	nsv442701	chr15:45737096-45748752	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45738200-45746600	Weak transcription	Osteobl	bone
2	chr15:45741000-45743600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:45741000-45746200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr15:45741000-45746400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr15:45741200-45743600	Weak transcription	HSMM	muscle
6	chr15:45741400-45744000	Active TSS	Colonic Mucosa	Colon
7	chr15:45741600-45743600	Active TSS	Rectal Mucosa Donor 29	rectum
8	chr15:45741600-45744200	Active TSS	Rectal Smooth Muscle	rectum
9	chr15:45742000-45743600	Active TSS	Stomach Mucosa	stomach
10	chr15:45742000-45744000	Enhancers	Esophagus	oesophagus
11	chr15:45742400-45743800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:45742400-45744600	Weak transcription	Liver	Liver
13	chr15:45742600-45743400	Active TSS	Pancreas	Pancrea
14	chr15:45742600-45743600	Active TSS	Rectal Mucosa Donor 31	rectum
15	chr15:45742600-45746200	Weak transcription	Hela-S3	cervix
16	chr15:45742800-45743400	Flanking Active TSS	Fetal Intestine Small	intestine
17	chr15:45743000-45743400	Flanking Active TSS	Duodenum Mucosa	Duodenum
18	chr15:45743000-45746200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr15:45743200-45743600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:45743200-45743800	Weak transcription	Gastric	stomach
21	chr15:45743200-45743800	Weak transcription	Lung	lung
22	chr15:45743200-45744000	Enhancers	Fetal Intestine Large	intestine
23	chr15:45743200-45746000	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr15:45743200-45746800	Weak transcription	Small Intestine	intestine

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