Variant report

Variant	rs569388795
Chromosome Location	chr2:153246790-153246791
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834419	chr2:153179420-153381476	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1005012	chr2:153206764-153273886	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3693436	chr2:153219836-153479857	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv979137	chr2:153246337-153247112	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153226200-153249400	Weak transcription	Right Ventricle	heart
2	chr2:153226200-153251800	Weak transcription	HSMMtube	muscle
3	chr2:153229200-153252400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:153233400-153249000	Weak transcription	Gastric	stomach
5	chr2:153233800-153255400	Weak transcription	NHEK	skin
6	chr2:153237400-153249000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:153237400-153255400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr2:153237400-153255400	Weak transcription	HMEC	breast
9	chr2:153238600-153258600	Weak transcription	Left Ventricle	heart
10	chr2:153241200-153251600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr2:153241200-153255400	Weak transcription	Pancreas	Pancrea
12	chr2:153241600-153249000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:153242600-153247200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr2:153242800-153247800	Weak transcription	Psoas Muscle	Psoas
15	chr2:153242800-153248000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr2:153242800-153248000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr2:153242800-153249200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:153242800-153252600	Weak transcription	A549	lung
19	chr2:153243000-153247200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr2:153243000-153251600	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr2:153243200-153249200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr2:153243400-153247400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:153243400-153252600	Weak transcription	Fetal Brain Female	brain
24	chr2:153243600-153247000	Weak transcription	Brain Anterior Caudate	brain
25	chr2:153243800-153246800	Weak transcription	Stomach Mucosa	stomach
26	chr2:153243800-153252000	Weak transcription	Fetal Lung	lung
27	chr2:153244400-153247200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr2:153244600-153246800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr2:153245000-153247000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr2:153245000-153249200	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr2:153245000-153251800	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr2:153245600-153247000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr2:153245800-153247000	Weak transcription	Brain Hippocampus Middle	brain
34	chr2:153245800-153247200	Weak transcription	Brain Cingulate Gyrus	brain
35	chr2:153245800-153247400	Weak transcription	Brain Angular Gyrus	brain
36	chr2:153245800-153250800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr2:153245800-153250800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr2:153246000-153247000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr2:153246000-153247200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr2:153246000-153247400	Strong transcription	Fetal Stomach	stomach
41	chr2:153246000-153248200	Strong transcription	HepG2	liver
42	chr2:153246000-153251400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr2:153246200-153247000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr2:153246200-153247400	Enhancers	Placenta	Placenta
45	chr2:153246200-153247600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr2:153246400-153247400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr2:153246400-153247400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr2:153246400-153247400	Strong transcription	Fetal Intestine Small	intestine
49	chr2:153246400-153251600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr2:153246600-153246800	Enhancers	Ovary	ovary

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