The 2.0 version of rSNPBase

Variant report

Variant rs56940130
Chromosome Location chr2:54191794-54191795
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:114 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:54153400-54194600 Weak transcription Fetal Brain Male brain
2 chr2:54159400-54195800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
3 chr2:54174200-54195600 Weak transcription Thymus Thymus
4 chr2:54175200-54193000 Weak transcription Fetal Intestine Small intestine
5 chr2:54175200-54195400 Weak transcription Fetal Stomach stomach
6 chr2:54176200-54192000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
7 chr2:54176200-54194200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
8 chr2:54176200-54194600 Weak transcription Skeletal Muscle Female skeletal muscle
9 chr2:54176200-54195400 Weak transcription Fetal Intestine Large intestine
10 chr2:54176200-54195400 Weak transcription Rectal Mucosa Donor 29 rectum
11 chr2:54176200-54196000 Weak transcription Fetal Thymus thymus
12 chr2:54176200-54196200 Weak transcription Placenta Placenta
13 chr2:54176400-54194800 Weak transcription NHLF lung
14 chr2:54176400-54195000 Weak transcription HSMM muscle
15 chr2:54176800-54192200 Weak transcription Hela-S3 cervix
16 chr2:54177000-54194800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
17 chr2:54177400-54194400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr2:54177800-54195400 Weak transcription Right Ventricle heart
19 chr2:54180000-54195400 Weak transcription Primary mononuclear cells fromperipheralblood Blood
20 chr2:54180400-54191800 Weak transcription Primary T regulatory cells fromperipheralblood blood
21 chr2:54187600-54192600 Enhancers HUES48 Cell Line embryonic stem cell
22 chr2:54188000-54192800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
23 chr2:54188200-54192400 Enhancers iPS-15b Cell Line embryonic stem cell
24 chr2:54188200-54192400 Enhancers iPS-18 Cell Line embryonic stem cell
25 chr2:54188200-54192400 Enhancers Brain Substantia Nigra brain
26 chr2:54188200-54192600 Enhancers HUES64 Cell Line embryonic stem cell
27 chr2:54188200-54192800 Enhancers Primary T cells from cord blood blood
28 chr2:54188400-54193000 Enhancers Primary B cells from cord blood blood
29 chr2:54188400-54195400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
30 chr2:54188600-54195200 Weak transcription Fetal Muscle Leg muscle
31 chr2:54188800-54192200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
32 chr2:54188800-54192200 Weak transcription Stomach Mucosa stomach
33 chr2:54188800-54192400 Enhancers A549 lung
34 chr2:54188800-54195800 Enhancers Primary T helper cells fromperipheralblood blood
35 chr2:54189000-54192400 Enhancers Primary hematopoietic stem cells short term culture blood
36 chr2:54189000-54194000 Weak transcription Stomach Smooth Muscle stomach
37 chr2:54189000-54195400 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
38 chr2:54189200-54194200 Enhancers HepG2 liver
39 chr2:54189400-54191800 Weak transcription Adipose Nuclei Adipose
40 chr2:54189400-54195400 Enhancers Primary T helper cells PMA-I stimulated --
41 chr2:54189600-54192400 Enhancers Primary T helper naive cells from peripheral blood blood
42 chr2:54189600-54192800 Enhancers H1 Cell Line embryonic stem cell
43 chr2:54189600-54195600 Weak transcription Fetal Kidney kidney
44 chr2:54189800-54191800 Weak transcription Brain Anterior Caudate brain
45 chr2:54189800-54192000 Weak transcription Fetal Heart heart
46 chr2:54189800-54192400 Enhancers HMEC breast
47 chr2:54189800-54196400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
48 chr2:54190000-54196400 Weak transcription ES-WA7 Cell Line embryonic stem cell
49 chr2:54190200-54195000 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
50 chr2:54190400-54191800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015