Variant report
| Variant | rs569448926 |
|---|---|
| Chromosome Location | chr9:104997387-104997388 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:104996734..105000664-chr9:105001906..105004565,3 | K562 | blood: |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-C9orf107-2 | chr9:104997351-104999003 | NONHSAT133757 |
| 2 | lnc-C9orf107-2 | chr9:104997351-104999003 | FPKM1_group_33624_transcript_3 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048227 | chr9:104546761-105162810 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh | TF binding regionChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv831674 | chr9:104827719-105011190 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1052675 | chr9:104868071-105042725 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv893642 | chr9:104904454-105158032 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv1038241 | chr9:104943675-105046156 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv893645 | chr9:104992089-105046926 | Enhancers Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 7 | nsv893646 | chr9:104993672-105046926 | Enhancers Weak transcription Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
