Variant report

Variant	rs569459151
Chromosome Location	chr9:136759363-136759364
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:136757643..136759941-chr9:136779061..136782245,3	MCF-7	breast:
2	chr9:136700233..136703130-chr9:136758245..136760331,2	K562	blood:
3	chr9:136758317..136760487-chr9:136855626..136857972,2	MCF-7	breast:
4	chr9:136754690..136760274-chr9:136856094..136858875,6	MCF-7	breast:
5	chr9:136757498..136759392-chr9:136764374..136766892,2	MCF-7	breast:
6	chr9:136757830..136760683-chr9:136767743..136769903,3	MCF-7	breast:
7	chr9:136757547..136761055-chr9:136762339..136765392,5	MCF-7	breast:
8	chr9:136702699..136705430-chr9:136757863..136760200,2	MCF-7	breast:
9	chr9:136759076..136761112-chr9:136765493..136767584,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000160293	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894114	chr9:136538798-136779153	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv831745	chr9:136593702-136780273	Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv894122	chr9:136632662-136760639	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv1035272	chr9:136665308-136772256	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv894123	chr9:136682408-136852501	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
6	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
8	nsv894126	chr9:136747832-136779153	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv894127	chr9:136747832-136811772	Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv1801832	chr9:136753246-136759587	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv1798102	chr9:136753246-136771319	Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	esv1832030	chr9:136753246-136785840	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	esv1829795	chr9:136753246-136787253	Enhancers Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
14	nsv894128	chr9:136753246-136906752	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
15	nsv894129	chr9:136754076-136779153	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv466623	chr9:136755590-136762232	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv615710	chr9:136755590-136762232	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
18	nsv437652	chr9:136758586-136767301	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv615737	chr9:136759210-136762800	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136729600-136780000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr9:136729800-136762600	Weak transcription	Right Ventricle	heart
3	chr9:136736000-136760000	Weak transcription	Primary B cells from cord blood	blood
4	chr9:136747600-136780800	Weak transcription	Right Atrium	heart
5	chr9:136748200-136762200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:136748800-136770600	Weak transcription	Esophagus	oesophagus
7	chr9:136751600-136768200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr9:136753000-136813200	Weak transcription	Aorta	Aorta
9	chr9:136753800-136762400	Weak transcription	Adipose Nuclei	Adipose
10	chr9:136754200-136762600	Weak transcription	Fetal Lung	lung
11	chr9:136754800-136765200	Weak transcription	GM12878-XiMat	blood
12	chr9:136755400-136760800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr9:136755400-136769400	Weak transcription	Fetal Brain Female	brain
14	chr9:136755400-136769600	Weak transcription	Brain Anterior Caudate	brain
15	chr9:136755600-136762400	Weak transcription	HSMMtube	muscle
16	chr9:136755600-136769600	Weak transcription	Fetal Brain Male	brain
17	chr9:136755600-136771800	Weak transcription	HMEC	breast
18	chr9:136755600-136776000	Weak transcription	NHEK	skin
19	chr9:136755800-136762800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr9:136755800-136762800	Weak transcription	NHLF	lung
21	chr9:136756200-136760000	Weak transcription	Brain Germinal Matrix	brain
22	chr9:136756200-136762400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr9:136756200-136772600	Weak transcription	NH-A	brain
24	chr9:136756800-136762600	Weak transcription	HSMM	muscle
25	chr9:136757000-136762000	Enhancers	Liver	Liver
26	chr9:136757200-136759400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr9:136757200-136759400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr9:136757400-136759600	Enhancers	Fetal Intestine Large	intestine
29	chr9:136757400-136760800	Strong transcription	Fetal Stomach	stomach
30	chr9:136757400-136761000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr9:136757600-136759600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:136757600-136760200	Strong transcription	Lung	lung
33	chr9:136757600-136760800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr9:136757800-136760000	Genic enhancers	Fetal Intestine Small	intestine
35	chr9:136757800-136760200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:136757800-136760800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr9:136758000-136759400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr9:136758000-136760800	Strong transcription	Primary B cells from peripheral blood	blood
39	chr9:136758000-136763000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr9:136758200-136779000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr9:136758400-136759400	Genic enhancers	Gastric	stomach
42	chr9:136758400-136759600	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr9:136758400-136760200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr9:136758400-136760200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr9:136758400-136760200	Genic enhancers	Pancreas	Pancrea
46	chr9:136758400-136760600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr9:136758400-136760800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr9:136758400-136760800	Strong transcription	Fetal Muscle Trunk	muscle
49	chr9:136758400-136762000	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr9:136758400-136762400	Weak transcription	Hela-S3	cervix

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