Variant report

Variant	rs569463228
Chromosome Location	chr7:87141975-87141976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:86945698..86948124-chr7:87141645..87143265,2	MCF-7	breast:
2	chr7:87137223..87139842-chr7:87141134..87143176,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025277	chr7:86299224-87206007	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
2	nsv538999	chr7:86299224-87206007	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
3	nsv888677	chr7:86802025-87781111	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
4	nsv464622	chr7:86832603-87541248	Weak transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
5	nsv607725	chr7:86832603-87541248	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
6	esv1828294	chr7:86857553-87147397	Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv1026153	chr7:86905796-87258822	Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
8	nsv1015862	chr7:87075394-88049798	Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv888691	chr7:87141814-87157051	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:87132600-87151400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr7:87132800-87153400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:87133400-87164400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:87133600-87149600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:87134400-87150200	Strong transcription	Primary T cells from cord blood	blood
6	chr7:87134800-87144800	Strong transcription	Placenta	Placenta
7	chr7:87135400-87145200	Weak transcription	Spleen	Spleen
8	chr7:87135400-87198000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:87137200-87142000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:87137200-87144000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr7:87137200-87147400	Strong transcription	Liver	Liver
12	chr7:87138400-87173400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr7:87138800-87142400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr7:87138800-87144000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:87138800-87144600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:87138800-87145800	Weak transcription	Fetal Intestine Large	intestine
17	chr7:87138800-87160600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr7:87138800-87185000	Weak transcription	Primary B cells from cord blood	blood
19	chr7:87139000-87142000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:87139400-87142200	Weak transcription	Primary hematopoietic stem cells	blood
21	chr7:87139400-87211000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr7:87139600-87197800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr7:87139800-87143400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
24	chr7:87139800-87144200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr7:87140000-87142000	Weak transcription	Brain Germinal Matrix	brain
26	chr7:87140200-87142200	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr7:87140600-87142400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr7:87140800-87142600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr7:87141000-87143000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr7:87141200-87143200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr7:87141400-87144200	Weak transcription	HepG2	liver
32	chr7:87141600-87142800	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr7:87141600-87144600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr7:87141800-87172800	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links