Variant report

Variant	rs569533954
Chromosome Location	chr5:146844304-146844305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:146843533..146844497-chr5:146938186..146939120,6	MCF-7	breast:
2	chr5:146843342..146844495-chr5:146957725..146958288,5	MCF-7	breast:
3	chr5:146843544..146844324-chr5:146956668..146957286,3	MCF-7	breast:
4	chr5:146843864..146844427-chr5:146939683..146940421,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5055	chr5:146812672-146857424	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	esv992285	chr5:146843809-146854803	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:146835800-146858800	Weak transcription	NH-A	brain
2	chr5:146836000-146845400	Weak transcription	Colon Smooth Muscle	Colon
3	chr5:146836200-146845200	Weak transcription	Brain Germinal Matrix	brain
4	chr5:146836200-146845200	Weak transcription	Ovary	ovary
5	chr5:146836200-146846200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:146836200-146846200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr5:146836200-146851600	Weak transcription	Fetal Stomach	stomach
8	chr5:146836400-146845000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr5:146838400-146846000	Weak transcription	Left Ventricle	heart
10	chr5:146839600-146851600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr5:146839600-146852200	Weak transcription	Aorta	Aorta
12	chr5:146839800-146846000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr5:146840000-146859200	Weak transcription	NHLF	lung
14	chr5:146840400-146845800	Weak transcription	Stomach Smooth Muscle	stomach
15	chr5:146840800-146846000	Weak transcription	Fetal Muscle Leg	muscle
16	chr5:146841200-146847200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr5:146841600-146845800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:146842600-146857600	Weak transcription	Osteobl	bone
19	chr5:146842800-146851600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr5:146843400-146844400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:146843600-146844400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr5:146843600-146844400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr5:146843600-146844400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr5:146843600-146844400	Enhancers	Right Atrium	heart
25	chr5:146843800-146852000	Weak transcription	Fetal Brain Male	brain
26	chr5:146844000-146844400	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr5:146844000-146844400	Enhancers	H9 Cell Line	embryonic stem cell
28	chr5:146844000-146844400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr5:146844000-146844400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr5:146844000-146844400	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr5:146844000-146844400	Enhancers	Brain Anterior Caudate	brain
32	chr5:146844000-146844600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr5:146844200-146844400	Enhancers	Stomach Mucosa	stomach
34	chr5:146844200-146844600	Enhancers	H1 Cell Line	embryonic stem cell
35	chr5:146844200-146845800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr5:146844200-146846000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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