Variant report

Variant	rs569536920
Chromosome Location	chr11:34072217-34072218
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:34072014-34075240	U87	brain:	n/a	n/a
2	POLR2A	chr11:34071825-34075659	GM12891	blood:	n/a	n/a
3	POLR2A	chr11:34072026-34072499	U87	brain:	n/a	n/a
4	POLR2A	chr11:34071900-34075767	SK-N-MC	brain:	n/a	n/a
5	MXI1	chr11:34072057-34076116	SK-N-SH	brain:	n/a	n/a
6	POLR2A	chr11:34070322-34075592	SK-N-MC	brain:	n/a	n/a
7	POLR2A	chr11:34072026-34074165	U87	brain:	n/a	n/a
8	CUX1	chr11:34072201-34072594	K562	blood:	n/a	n/a
9	POLR2A	chr11:34072181-34072256	MCF10A-Er-Src	breast:	n/a	n/a
10	POLR2A	chr11:34072198-34075546	PFSK-1	brain:	n/a	n/a
11	POLR2A	chr11:34072078-34075483	PANC-1	pancreas:	n/a	n/a
12	EBF1	chr11:34072162-34072469	GM12878	blood:	n/a	chr11:34072303-34072313 chr11:34072301-34072312 chr11:34072302-34072312 chr11:34072301-34072314 chr11:34072303-34072312
13	POLR2A	chr11:34071426-34076005	K562	blood:	n/a	n/a
14	STAT3	chr11:34072201-34072401	MCF10A-Er-Src	breast:	n/a	n/a
15	EBF1	chr11:34072126-34072488	GM12878	blood:	n/a	chr11:34072303-34072313 chr11:34072301-34072312 chr11:34072302-34072312 chr11:34072301-34072314 chr11:34072303-34072312
16	POLR2A	chr11:34072012-34075256	U87	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:34042157..34043774-chr11:34070520..34073015,2	MCF-7	breast:
2	chr11:34072129..34073643-chr11:34109400..34112113,2	MCF-7	breast:
3	chr11:34072138..34074908-chr17:56707935..56709645,2	MCF-7	breast:
4	chr1:149222363..149225341-chr11:34071940..34074204,2	MCF-7	breast:
5	chr11:34072006..34079358-chr11:34124269..34129390,19	K562	blood:
6	chr11:34068673..34076707-chr11:34122442..34129826,21	K562	blood:
7	chr11:34070943..34077471-chr11:34125498..34130034,9	MCF-7	breast:
8	chr11:34071305..34076629-chr11:34124370..34130035,10	MCF-7	breast:
9	chr11:34071981..34076766-chr11:34377622..34383038,7	MCF-7	breast:

Variant related genes	Relation type
CAPRIN1	TF binding region
ENSG00000166016	Chromatin interaction
ENSG00000206737	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000135372	Chromatin interaction
ENSG00000135387	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424593	chr11:34071901-34074749	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Weak transcription	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34066400-34072600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:34067000-34072400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:34067200-34072400	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr11:34067200-34072600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:34070600-34072600	Enhancers	Placenta	Placenta
6	chr11:34071600-34072400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr11:34071600-34072400	Enhancers	Adipose Nuclei	Adipose
8	chr11:34071600-34072400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr11:34071600-34072400	Enhancers	Fetal Intestine Small	intestine
10	chr11:34071600-34072400	Enhancers	HSMMtube	muscle
11	chr11:34071600-34072400	Enhancers	Osteobl	bone
12	chr11:34071800-34072400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:34071800-34072400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr11:34071800-34072400	Enhancers	Fetal Heart	heart
15	chr11:34071800-34072400	Enhancers	Fetal Intestine Large	intestine
16	chr11:34071800-34072400	Enhancers	Fetal Kidney	kidney
17	chr11:34071800-34072400	Enhancers	Fetal Muscle Leg	muscle
18	chr11:34071800-34072400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr11:34071800-34072400	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr11:34071800-34072400	Enhancers	HMEC	breast
21	chr11:34071800-34072400	Enhancers	HSMM	muscle
22	chr11:34071800-34072400	Enhancers	NH-A	brain
23	chr11:34071800-34072600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:34071800-34072800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr11:34071800-34072800	Flanking Active TSS	K562	blood
26	chr11:34072000-34072400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr11:34072000-34072400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr11:34072000-34072400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr11:34072000-34072400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:34072000-34072400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr11:34072000-34072400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr11:34072000-34072400	Enhancers	Liver	Liver
33	chr11:34072000-34072400	Enhancers	Brain Anterior Caudate	brain
34	chr11:34072000-34072400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
35	chr11:34072000-34072400	Enhancers	Brain Substantia Nigra	brain
36	chr11:34072000-34072400	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr11:34072000-34072400	Enhancers	Fetal Stomach	stomach
38	chr11:34072000-34072400	Enhancers	Rectal Smooth Muscle	rectum
39	chr11:34072000-34072400	Weak transcription	Right Atrium	heart
40	chr11:34072000-34072400	Enhancers	NHLF	lung
41	chr11:34072000-34072600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
42	chr11:34072000-34072600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr11:34072000-34072600	Weak transcription	Aorta	Aorta
44	chr11:34072000-34072600	Enhancers	Stomach Mucosa	stomach
45	chr11:34072000-34072600	Flanking Active TSS	Stomach Smooth Muscle	stomach
46	chr11:34072000-34072800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:34072000-34072800	Flanking Active TSS	Dnd41	blood
48	chr11:34072200-34072400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:34072200-34072400	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr11:34072200-34072400	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell

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