Variant report

Variant	rs569541669
Chromosome Location	chr8:86024620-86024621
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:86023655..86027184-chr8:86028294..86031138,3	K562	blood:
2	chr8:86019642..86022223-chr8:86022348..86025205,2	K562	blood:
3	chr8:86019339..86022486-chr8:86024530..86028915,4	K562	blood:
4	chr8:86017751..86020340-chr8:86024558..86026494,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133739	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1033160	chr8:86010643-86030560	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
4	esv1797206	chr8:86023237-86060072	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86020000-86057400	Weak transcription	Small Intestine	intestine
2	chr8:86020200-86025800	Weak transcription	Right Ventricle	heart
3	chr8:86020200-86032600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:86020200-86042200	Weak transcription	Left Ventricle	heart
5	chr8:86020400-86032400	Weak transcription	Fetal Thymus	thymus
6	chr8:86020400-86034400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr8:86020400-86043800	Weak transcription	NH-A	brain
8	chr8:86020400-86044400	Weak transcription	Fetal Muscle Leg	muscle
9	chr8:86020400-86048400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr8:86020400-86048400	Weak transcription	Fetal Stomach	stomach
11	chr8:86020400-86049000	Weak transcription	Primary B cells from peripheral blood	blood
12	chr8:86020400-86054800	Weak transcription	Lung	lung
13	chr8:86020400-86055400	Weak transcription	Fetal Kidney	kidney
14	chr8:86020400-86055400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr8:86020400-86056400	Weak transcription	Gastric	stomach
16	chr8:86020400-86057400	Weak transcription	Aorta	Aorta
17	chr8:86020400-86062600	Weak transcription	Pancreas	Pancrea
18	chr8:86020600-86024800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr8:86020600-86026200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr8:86020600-86029400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr8:86020600-86031800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr8:86020600-86031800	Weak transcription	HMEC	breast
23	chr8:86020600-86032000	Weak transcription	NHEK	skin
24	chr8:86020600-86032400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr8:86020600-86034400	Weak transcription	Liver	Liver
26	chr8:86020600-86039200	Weak transcription	Adipose Nuclei	Adipose
27	chr8:86020600-86041600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr8:86020600-86044200	Weak transcription	Primary T cells from cord blood	blood
29	chr8:86020600-86045800	Weak transcription	Thymus	Thymus
30	chr8:86020600-86048800	Weak transcription	Primary monocytes fromperipheralblood	blood
31	chr8:86020600-86049000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr8:86020600-86049200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr8:86020600-86052400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr8:86020600-86054600	Weak transcription	Stomach Smooth Muscle	stomach
35	chr8:86020600-86058800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr8:86020800-86024800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr8:86020800-86025000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr8:86020800-86039000	Weak transcription	Brain Hippocampus Middle	brain
39	chr8:86020800-86050600	Weak transcription	Brain Angular Gyrus	brain
40	chr8:86021000-86024800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr8:86021000-86028600	Weak transcription	Fetal Heart	heart
42	chr8:86021000-86032000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr8:86021000-86034400	Weak transcription	Fetal Lung	lung
44	chr8:86021000-86039800	Weak transcription	Duodenum Mucosa	Duodenum
45	chr8:86021000-86039800	Weak transcription	NHDF-Ad	bronchial
46	chr8:86021000-86046000	Weak transcription	Colon Smooth Muscle	Colon
47	chr8:86021000-86049800	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr8:86021200-86027600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr8:86021200-86034800	Weak transcription	GM12878-XiMat	blood
50	chr8:86021200-86035000	Weak transcription	Fetal Intestine Small	intestine

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