Variant report

Variant	rs56955538
Chromosome Location	chr15:39799124-39799125
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:39796929..39799190-chr15:39801226..39804372,3	MCF-7	breast:
2	chr15:39798382..39801235-chr15:39873000..39875573,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000137801	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10520134	1.00[EUR][1000 genomes]
rs4924366	0.84[AFR][1000 genomes]
rs61588341	1.00[EUR][1000 genomes]
rs7183531	1.00[EUR][1000 genomes]
rs73401232	1.00[EUR][1000 genomes]
rs73401235	1.00[EUR][1000 genomes]
rs73401240	1.00[EUR][1000 genomes]
rs8030678	1.00[EUR][1000 genomes]
rs8033130	1.00[EUR][1000 genomes]
rs8038823	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049682	chr15:39657279-40027403	Enhancers Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv542361	chr15:39657279-40027403	Weak transcription Strong transcription Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv3373125	chr15:39691567-40061262	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv904094	chr15:39738006-39976057	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:39789000-39800800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:39789000-39803200	Weak transcription	Left Ventricle	heart
3	chr15:39791600-39803200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr15:39791600-39803400	Weak transcription	Fetal Lung	lung
5	chr15:39792200-39803600	Weak transcription	Ovary	ovary
6	chr15:39793800-39802200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr15:39793800-39803200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr15:39793800-39803400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:39794000-39800600	Weak transcription	HSMM	muscle
10	chr15:39794400-39802800	Weak transcription	Fetal Heart	heart
11	chr15:39794600-39801000	Weak transcription	Fetal Muscle Trunk	muscle
12	chr15:39795400-39800600	Weak transcription	K562	blood
13	chr15:39795400-39803200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:39796200-39799600	Enhancers	Osteobl	bone
15	chr15:39796400-39799400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr15:39796600-39799200	Enhancers	NH-A	brain
17	chr15:39796800-39804000	Weak transcription	Lung	lung
18	chr15:39797000-39803200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr15:39797600-39800800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr15:39797600-39800800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:39797600-39803200	Weak transcription	Colon Smooth Muscle	Colon
22	chr15:39797800-39800800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr15:39798000-39802400	Weak transcription	NHDF-Ad	bronchial
24	chr15:39798400-39803200	Weak transcription	NHLF	lung
25	chr15:39798600-39799200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:39798600-39799400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:39798800-39799200	Enhancers	HSMMtube	muscle
28	chr15:39798800-39799400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr15:39798800-39799400	Enhancers	HMEC	breast
30	chr15:39798800-39800800	Weak transcription	Fetal Muscle Leg	muscle
31	chr15:39799000-39799400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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