Variant report

Variant	rs56957762
Chromosome Location	chr6:144582895-144582896
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17073557	1.00[ASN][1000 genomes]
rs56817389	1.00[ASN][1000 genomes]
rs7747486	0.96[ASN][1000 genomes]
rs7748053	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9484853	0.84[ASN][1000 genomes]
rs9484861	1.00[ASN][1000 genomes]
rs9496909	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830831	chr6:144501371-144649509	Bivalent/Poised TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv830832	chr6:144572378-144759023	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2422260	chr6:144574591-144731630	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:144569800-144585200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:144581000-144584000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:144581400-144585000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr6:144581600-144587200	Weak transcription	Brain Germinal Matrix	brain
5	chr6:144582000-144583800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:144582000-144585000	Weak transcription	Fetal Heart	heart
7	chr6:144582000-144585000	Weak transcription	NHEK	skin
8	chr6:144582000-144585200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr6:144582200-144584600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:144582200-144584600	Weak transcription	HSMMtube	muscle
11	chr6:144582200-144585000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:144582200-144585000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:144582200-144585600	Weak transcription	Fetal Intestine Large	intestine
14	chr6:144582400-144583600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr6:144582400-144583800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr6:144582400-144584600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:144582400-144584600	Weak transcription	A549	lung
18	chr6:144582400-144584600	Weak transcription	HSMM	muscle
19	chr6:144582400-144584600	Weak transcription	Osteobl	bone
20	chr6:144582400-144584800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:144582400-144584800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr6:144582400-144585000	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr6:144582400-144585000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:144582600-144584000	Weak transcription	HepG2	liver
25	chr6:144582600-144584800	Weak transcription	NHDF-Ad	bronchial
26	chr6:144582600-144587400	Weak transcription	Ovary	ovary

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