Variant report

Variant	rs56958505
Chromosome Location	chr18:40115069-40115070
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55917315	0.81[AFR][1000 genomes]
rs56372756	0.81[AFR][1000 genomes]
rs56712294	0.81[AFR][1000 genomes]
rs59721155	0.81[AFR][1000 genomes]
rs7234447	0.81[AFR][1000 genomes]
rs73953414	0.81[AFR][1000 genomes]
rs73953415	0.81[AFR][1000 genomes]
rs73953419	0.81[AFR][1000 genomes]
rs73953420	0.81[AFR][1000 genomes]
rs73953422	0.81[AFR][1000 genomes]
rs73953425	0.81[AFR][1000 genomes]
rs73953429	0.81[AFR][1000 genomes]
rs73953431	0.81[AFR][1000 genomes]
rs73953432	0.81[AFR][1000 genomes]
rs73953434	0.82[AFR][1000 genomes]
rs73953437	0.81[AFR][1000 genomes]
rs8087416	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059409	chr18:39711099-40139446	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv909573	chr18:40050363-40131269	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2754458	chr18:40070202-40164902	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40107000-40115800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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