Variant report

Variant	rs569585175
Chromosome Location	chr10:93224200-93224201
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93169232..93170758-chr10:93223754..93225469,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
3	nsv948134	chr10:93224011-93239053	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93184400-93226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:93186000-93226800	Weak transcription	Pancreas	Pancrea
3	chr10:93213200-93224200	Weak transcription	Aorta	Aorta
4	chr10:93214200-93272000	Weak transcription	HUVEC	blood vessel
5	chr10:93218000-93224200	Weak transcription	Left Ventricle	heart
6	chr10:93218000-93230600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr10:93218200-93224200	Weak transcription	Esophagus	oesophagus
8	chr10:93218600-93228200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:93219600-93224200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:93219600-93247600	Weak transcription	HSMMtube	muscle
11	chr10:93219800-93224200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr10:93219800-93224200	Strong transcription	Adipose Nuclei	Adipose
13	chr10:93220000-93224200	Weak transcription	Fetal Intestine Small	intestine
14	chr10:93220200-93224800	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr10:93220200-93225000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:93220200-93225000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:93220200-93226200	Weak transcription	Stomach Smooth Muscle	stomach
18	chr10:93220200-93226800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr10:93220400-93224200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:93220600-93226600	Weak transcription	NHLF	lung
21	chr10:93220600-93226800	Weak transcription	A549	lung
22	chr10:93220600-93271400	Weak transcription	HMEC	breast
23	chr10:93220800-93229200	Weak transcription	Duodenum Mucosa	Duodenum
24	chr10:93220800-93248200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr10:93220800-93259400	Weak transcription	Primary T cells from cord blood	blood
26	chr10:93221000-93226600	Weak transcription	Rectal Smooth Muscle	rectum
27	chr10:93221000-93228800	Weak transcription	Primary B cells from cord blood	blood
28	chr10:93221600-93224400	Weak transcription	Fetal Stomach	stomach
29	chr10:93221800-93224400	Weak transcription	Primary hematopoietic stem cells	blood
30	chr10:93221800-93224800	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:93221800-93225000	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr10:93221800-93225200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr10:93221800-93225400	Strong transcription	HSMM	muscle
34	chr10:93221800-93226600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr10:93222000-93225200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:93222200-93224200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr10:93222200-93224200	Strong transcription	Colon Smooth Muscle	Colon
38	chr10:93222200-93226000	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr10:93222200-93228000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr10:93222400-93224200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr10:93222400-93224200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr10:93222400-93224600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
43	chr10:93222400-93225000	Weak transcription	Brain Hippocampus Middle	brain
44	chr10:93222400-93225200	Strong transcription	Dnd41	blood
45	chr10:93222400-93226400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr10:93222400-93228200	Strong transcription	Fetal Brain Male	brain
47	chr10:93222400-93230400	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr10:93222600-93224200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:93222600-93226800	Weak transcription	Gastric	stomach
50	chr10:93222600-93226800	Weak transcription	Thymus	Thymus

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