Variant report

Variant	rs569607247
Chromosome Location	chr11:127545706-127545707
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898445	chr11:127377733-127713173	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1043894	chr11:127423435-127637119	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv541202	chr11:127423435-127637119	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1035919	chr11:127500933-127561596	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv541203	chr11:127500933-127561596	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1050596	chr11:127528390-127608257	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv826124	chr11:127545193-127580415	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:127545000-127545800	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr11:127545000-127546000	Enhancers	Brain Inferior Temporal Lobe	brain
3	chr11:127545000-127549400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:127545200-127545800	Bivalent Enhancer	Aorta	Aorta
5	chr11:127545200-127545800	Enhancers	Left Ventricle	heart
6	chr11:127545200-127545800	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr11:127545200-127546000	Enhancers	Liver	Liver
8	chr11:127545200-127546000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:127545200-127546000	Enhancers	Pancreas	Pancrea
10	chr11:127545200-127546000	Enhancers	Spleen	Spleen
11	chr11:127545200-127546200	Enhancers	Adipose Nuclei	Adipose
12	chr11:127545200-127546200	Enhancers	Brain Hippocampus Middle	brain
13	chr11:127545200-127546200	Enhancers	Fetal Intestine Small	intestine
14	chr11:127545200-127546400	Enhancers	Psoas Muscle	Psoas
15	chr11:127545200-127547400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:127545400-127546000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr11:127545400-127546000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:127545400-127546000	Enhancers	Rectal Smooth Muscle	rectum
19	chr11:127545400-127546000	Enhancers	Sigmoid Colon	Sigmoid Colon
20	chr11:127545400-127546200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:127545400-127546200	Enhancers	Duodenum Mucosa	Duodenum
22	chr11:127545400-127546200	Enhancers	Fetal Lung	lung
23	chr11:127545400-127546400	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr11:127545400-127547600	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr11:127545600-127545800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr11:127545600-127545800	Enhancers	Brain Germinal Matrix	brain
27	chr11:127545600-127545800	Enhancers	Fetal Brain Female	brain
28	chr11:127545600-127545800	Enhancers	Gastric	stomach
29	chr11:127545600-127546000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr11:127545600-127546000	Enhancers	Brain Cingulate Gyrus	brain
31	chr11:127545600-127546000	Enhancers	Colon Smooth Muscle	Colon
32	chr11:127545600-127546000	Enhancers	Fetal Stomach	stomach
33	chr11:127545600-127546000	Enhancers	Right Atrium	heart
34	chr11:127545600-127546000	Enhancers	Small Intestine	intestine
35	chr11:127545600-127546200	Enhancers	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links