Variant report

Variant	rs569613246
Chromosome Location	chr4:87770548-87770549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:87770325-87770809	MCF10A-Er-Src	breast:	n/a	n/a
2	RAD21	chr4:87770472-87770672	Hela-S3	cervix:	n/a	n/a
3	CEBPB	chr4:87770307-87770729	Hela-S3	cervix:	n/a	n/a
4	STAT3	chr4:87770458-87770738	MCF10A-Er-Src	breast:	n/a	n/a
5	MYC	chr4:87770292-87770734	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr4:87770292-87770798	MCF10A-Er-Src	breast:	n/a	chr4:87770753-87770760
7	EP300	chr4:87770389-87770677	Hela-S3	cervix:	n/a	n/a
8	FOS	chr4:87770349-87770722	MCF10A-Er-Src	breast:	n/a	chr4:87770516-87770524
9	MYC	chr4:87770408-87770628	MCF10A-Er-Src	breast:	n/a	n/a
10	STAT3	chr4:87770272-87770798	MCF10A-Er-Src	breast:	n/a	chr4:87770753-87770760
11	STAT3	chr4:87770268-87770805	MCF10A-Er-Src	breast:	n/a	chr4:87770753-87770760
12	SMC3	chr4:87770461-87770732	Hela-S3	cervix:	n/a	n/a
13	FOS	chr4:87770244-87770736	MCF10A-Er-Src	breast:	n/a	chr4:87770516-87770524
14	POLR2A	chr4:87770292-87770834	MCF10A-Er-Src	breast:	n/a	n/a
15	FOS	chr4:87770356-87770656	MCF10A-Er-Src	breast:	n/a	chr4:87770516-87770524
16	FOS	chr4:87770246-87770733	MCF10A-Er-Src	breast:	n/a	chr4:87770516-87770524
17	STAT3	chr4:87770468-87770764	MCF10A-Er-Src	breast:	n/a	chr4:87770753-87770760

Variant related genes	Relation type
SLC10A6	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594787	chr4:87221827-87888667	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1013308	chr4:87769694-87870168	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87767000-87771000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:87768000-87770800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:87768200-87771400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:87768800-87770600	Enhancers	HMEC	breast
5	chr4:87769000-87770800	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr4:87769200-87770600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:87769200-87771200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr4:87769400-87770600	Enhancers	Spleen	Spleen
9	chr4:87769600-87770600	Enhancers	NHDF-Ad	bronchial
10	chr4:87769600-87771200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr4:87769600-87771600	Enhancers	Fetal Muscle Trunk	muscle
12	chr4:87769600-87771600	Flanking Active TSS	NHEK	skin
13	chr4:87769600-87776800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr4:87769800-87771600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:87769800-87778600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr4:87770000-87771600	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr4:87770200-87770600	Flanking Active TSS	Brain Angular Gyrus	brain
18	chr4:87770200-87770600	Flanking Active TSS	Brain Hippocampus Middle	brain
19	chr4:87770200-87770600	Active TSS	Psoas Muscle	Psoas
20	chr4:87770200-87771200	Enhancers	Brain Anterior Caudate	brain
21	chr4:87770200-87771200	Enhancers	Brain Cingulate Gyrus	brain
22	chr4:87770200-87771600	Flanking Active TSS	Hela-S3	cervix
23	chr4:87770200-87776800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr4:87770400-87770600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr4:87770400-87770800	Active TSS	Right Atrium	heart
26	chr4:87770400-87771000	Weak transcription	Esophagus	oesophagus
27	chr4:87770400-87771200	Enhancers	Brain Substantia Nigra	brain
28	chr4:87770400-87771200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr4:87770400-87771400	Weak transcription	Left Ventricle	heart
30	chr4:87770400-87771800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr4:87770400-87778600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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