Variant report

Variant	rs569650872
Chromosome Location	chr10:52413973-52413974
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:52413900-52414050	K562	blood:	n/a	n/a
2	BACH1	chr10:52413762-52414021	K562	blood:	n/a	n/a
3	MYC	chr10:52413714-52414001	K562	blood:	n/a	n/a
4	YY1	chr10:52413863-52414159	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:52382192..52390666-chr10:52409582..52414601,12	MCF-7	breast:
2	chr10:52389046..52395992-chr10:52408718..52416095,10	K562	blood:

Variant related genes	Relation type
ENSG00000231345	TF binding region
ENSG00000231588	Chromatin interaction
ENSG00000198964	Chromatin interaction
ENSG00000226200	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051087	chr10:51886486-52447295	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv916214	chr10:51886486-52458983	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
3	nsv918212	chr10:51886486-52465482	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv817412	chr10:51911034-52432990	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	nsv469522	chr10:52276564-52447589	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
6	nsv482564	chr10:52276564-52447589	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
7	nsv895393	chr10:52413720-52530819	Enhancers Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52410400-52414800	Enhancers	K562	blood
2	chr10:52411200-52419200	Weak transcription	Fetal Intestine Small	intestine
3	chr10:52411800-52414000	Enhancers	HUVEC	blood vessel
4	chr10:52412200-52414200	Enhancers	Primary B cells from peripheral blood	blood
5	chr10:52412200-52414800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:52412800-52414000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr10:52412800-52414000	Enhancers	Primary T cells from cord blood	blood
8	chr10:52412800-52414000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:52412800-52414000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr10:52412800-52414000	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr10:52412800-52414000	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr10:52412800-52414200	Enhancers	Adipose Nuclei	Adipose
13	chr10:52412800-52414800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr10:52413000-52414000	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr10:52413200-52414400	Weak transcription	Liver	Liver
16	chr10:52413200-52414400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr10:52413400-52414000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:52413400-52414000	Enhancers	Primary B cells from cord blood	blood
19	chr10:52413400-52414600	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr10:52413400-52414600	Enhancers	GM12878-XiMat	blood
21	chr10:52413600-52414400	Enhancers	Placenta	Placenta
22	chr10:52413600-52414600	Enhancers	Fetal Muscle Leg	muscle
23	chr10:52413600-52419200	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr10:52413600-52419600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:52413600-52419600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:52413800-52414000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr10:52413800-52414200	Enhancers	Primary hematopoietic stem cells	blood
28	chr10:52413800-52414400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr10:52413800-52418400	Weak transcription	Fetal Thymus	thymus
30	chr10:52413800-52418600	Weak transcription	Fetal Intestine Large	intestine
31	chr10:52413800-52419200	Weak transcription	Thymus	Thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links