Variant report

Variant	rs569660373
Chromosome Location	chr18:29737803-29737804
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:29737793..29738341-chr18:30132122..30132837,2	MCF-7	breast:
2	chr18:29737738..29738425-chr18:30129431..30129978,2	MCF-7	breast:
3	chr18:29737699..29739046-chr18:30132133..30133008,6	MCF-7	breast:
4	chr18:29737678..29740541-chr18:29744932..29747295,2	MCF-7	breast:
5	chr18:29737731..29738647-chr18:30131030..30131759,2	MCF-7	breast:
6	chr18:29737713..29738256-chr18:30129386..30129926,2	MCF-7	breast:
7	chr18:29737720..29738653-chr18:30132086..30132779,5	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056007	chr18:29711974-29899564	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	esv32777	chr18:29737074-29738017	Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29730400-29738000	Weak transcription	Fetal Lung	lung
2	chr18:29736200-29738200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr18:29736400-29738200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr18:29736600-29738000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr18:29736800-29738200	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr18:29737400-29738000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:29737600-29738000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr18:29737600-29738000	Flanking Active TSS	Hela-S3	cervix
9	chr18:29737600-29738200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr18:29737600-29738200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr18:29737600-29738600	Bivalent Enhancer	Dnd41	blood
12	chr18:29737800-29738000	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr18:29737800-29738000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr18:29737800-29738000	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr18:29737800-29738000	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr18:29737800-29738200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr18:29737800-29738200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr18:29737800-29738200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr18:29737800-29738200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr18:29737800-29738200	Enhancers	Colon Smooth Muscle	Colon
21	chr18:29737800-29738200	Enhancers	Fetal Brain Female	brain
22	chr18:29737800-29738200	Enhancers	Fetal Intestine Small	intestine
23	chr18:29737800-29738400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr18:29737800-29738400	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr18:29737800-29738600	Active TSS	H1 Cell Line	embryonic stem cell
26	chr18:29737800-29738600	Active TSS	iPS-20b Cell Line	embryonic stem cell
27	chr18:29737800-29738600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr18:29737800-29738600	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr18:29737800-29738600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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