Variant report

Variant	rs569664709
Chromosome Location	chr3:141660928-141660929
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141456126..141457791-chr3:141659173..141662093,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114125	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	esv3355546	chr3:141660462-141664660	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141621000-141670800	Weak transcription	Small Intestine	intestine
2	chr3:141625600-141668400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr3:141628200-141673600	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:141628600-141669000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr3:141628800-141669800	Weak transcription	Fetal Lung	lung
6	chr3:141628800-141674000	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:141629000-141739200	Weak transcription	Psoas Muscle	Psoas
8	chr3:141634200-141682000	Weak transcription	Brain Angular Gyrus	brain
9	chr3:141643000-141675800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:141643400-141671200	Weak transcription	Right Ventricle	heart
11	chr3:141644800-141678400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr3:141646800-141668200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr3:141647000-141668400	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:141647000-141669200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr3:141647200-141669400	Weak transcription	Primary B cells from cord blood	blood
16	chr3:141647400-141668200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:141647400-141670400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr3:141647600-141670600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr3:141647800-141664200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr3:141647800-141668200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr3:141647800-141670200	Weak transcription	Adipose Nuclei	Adipose
22	chr3:141648000-141664400	Weak transcription	Primary T cells from cord blood	blood
23	chr3:141648000-141670000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr3:141648000-141670800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr3:141648200-141663400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr3:141650000-141664200	Weak transcription	Dnd41	blood
27	chr3:141653200-141664400	Weak transcription	Fetal Stomach	stomach
28	chr3:141653400-141664200	Weak transcription	Fetal Muscle Trunk	muscle
29	chr3:141656600-141664400	Weak transcription	Esophagus	oesophagus
30	chr3:141656800-141664200	Weak transcription	Thymus	Thymus
31	chr3:141657000-141664600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr3:141658000-141661400	Enhancers	Fetal Intestine Large	intestine
33	chr3:141658600-141661200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
34	chr3:141658800-141661200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr3:141658800-141661200	Enhancers	Stomach Mucosa	stomach
36	chr3:141659000-141661000	Enhancers	Primary hematopoietic stem cells	blood
37	chr3:141659200-141661000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr3:141659200-141696200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr3:141659400-141661000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr3:141659400-141664000	Weak transcription	Fetal Thymus	thymus
41	chr3:141659400-141664400	Weak transcription	HSMMtube	muscle
42	chr3:141659400-141668400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr3:141659400-141673800	Weak transcription	Brain Germinal Matrix	brain
44	chr3:141659400-141678400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr3:141659600-141664400	Weak transcription	HSMM	muscle
46	chr3:141659600-141664600	ZNF genes & repeats	Fetal Intestine Small	intestine
47	chr3:141659600-141669400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:141659600-141670400	Weak transcription	NH-A	brain
49	chr3:141659600-141670800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr3:141659600-141671200	Weak transcription	Pancreas	Pancrea

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