Variant report

Variant	rs569670887
Chromosome Location	chr6:38144404-38144405
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:38143259..38145952-chr6:38146356..38150615,4	K562	blood:
2	chr6:38143298..38146088-chr6:38153690..38155707,2	K562	blood:
3	chr6:38144288..38145943-chr6:38150370..38152832,2	MCF-7	breast:
4	chr6:38137479..38141029-chr6:38143334..38147856,5	K562	blood:
5	chr6:38138220..38140617-chr6:38142892..38144834,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1020625	chr6:37833591-38155622	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2754649	chr6:37985025-38147910	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
7	nsv524213	chr6:38106844-38160627	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
8	nsv517973	chr6:38131442-38152460	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
9	nsv522522	chr6:38131442-38207636	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
10	nsv520567	chr6:38144269-38152460	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38121000-38159600	Weak transcription	Primary T cells fromperipheralblood	blood
2	chr6:38121800-38153600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr6:38123200-38153200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:38123400-38155400	Weak transcription	Aorta	Aorta
5	chr6:38123400-38157000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr6:38123400-38176800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:38123600-38153000	Weak transcription	Primary B cells from cord blood	blood
8	chr6:38123800-38151200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:38124000-38152200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:38124200-38151800	Weak transcription	Brain Anterior Caudate	brain
11	chr6:38129200-38145600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:38129400-38144600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr6:38131800-38167800	Weak transcription	Right Atrium	heart
14	chr6:38133600-38144600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:38133600-38160400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:38133600-38164000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr6:38136000-38159800	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr6:38136800-38145200	Genic enhancers	Fetal Intestine Small	intestine
19	chr6:38136800-38156000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr6:38138200-38147200	Weak transcription	Brain Hippocampus Middle	brain
21	chr6:38138400-38145200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr6:38138400-38145400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr6:38138400-38147200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr6:38138400-38147200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr6:38138600-38145400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr6:38138600-38169400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr6:38138800-38144600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr6:38138800-38145400	Weak transcription	Fetal Brain Female	brain
29	chr6:38138800-38147200	Weak transcription	Brain Germinal Matrix	brain
30	chr6:38138800-38147200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr6:38139000-38144600	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr6:38139200-38144800	Weak transcription	HSMM	muscle
33	chr6:38139800-38145000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:38140000-38144800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:38140000-38147200	Weak transcription	Brain Angular Gyrus	brain
36	chr6:38140400-38146200	Weak transcription	Small Intestine	intestine
37	chr6:38141200-38145000	Weak transcription	Liver	Liver
38	chr6:38141200-38152400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:38141400-38144600	Strong transcription	Stomach Smooth Muscle	stomach
40	chr6:38141600-38166200	Weak transcription	Left Ventricle	heart
41	chr6:38141800-38146400	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr6:38141800-38168000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr6:38142000-38150200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr6:38142200-38155400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr6:38142400-38153000	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr6:38142800-38144600	Weak transcription	Fetal Muscle Trunk	muscle
47	chr6:38142800-38147200	Weak transcription	Brain Substantia Nigra	brain
48	chr6:38142800-38162000	Weak transcription	Adipose Nuclei	Adipose
49	chr6:38143200-38144600	Enhancers	HepG2	liver
50	chr6:38143200-38146600	Enhancers	Duodenum Mucosa	Duodenum

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