Variant report

Variant	rs56967170
Chromosome Location	chr8:11336173-11336174
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1478886	0.87[ASN][1000 genomes]
rs1531576	0.84[ASN][1000 genomes]
rs17153343	0.92[EUR][1000 genomes]
rs58209053	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59028919	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs717717	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73537729	0.92[EUR][1000 genomes]
rs756038	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	esv34097	chr8:11177372-11489894	Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv1022074	chr8:11292256-11394526	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	esv2762725	chr8:11322997-11350721	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11332600-11336400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:11332600-11336600	Weak transcription	NHDF-Ad	bronchial
3	chr8:11332600-11337400	Weak transcription	Fetal Thymus	thymus
4	chr8:11332800-11337000	Weak transcription	HMEC	breast
5	chr8:11332800-11337000	Weak transcription	Osteobl	bone
6	chr8:11332800-11337200	Weak transcription	Lung	lung
7	chr8:11332800-11337200	Weak transcription	HUVEC	blood vessel
8	chr8:11332800-11337600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr8:11332800-11337800	Weak transcription	NHLF	lung
10	chr8:11332800-11338000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr8:11332800-11338200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr8:11333000-11337800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr8:11333000-11337800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr8:11333400-11337000	Weak transcription	NH-A	brain
15	chr8:11333600-11337000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr8:11333600-11337000	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr8:11333600-11337000	Weak transcription	A549	lung
18	chr8:11333600-11337200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:11333600-11337200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr8:11333600-11337200	Weak transcription	HSMMtube	muscle
21	chr8:11333800-11337000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr8:11333800-11337200	Weak transcription	HSMM	muscle
23	chr8:11334200-11336400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr8:11334200-11337200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:11334800-11339400	Weak transcription	Esophagus	oesophagus
26	chr8:11335000-11336200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr8:11335000-11337400	Weak transcription	Placenta	Placenta
28	chr8:11335000-11338400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr8:11335200-11336400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr8:11335600-11336200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr8:11336000-11339800	Enhancers	NHEK	skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links