Variant report

Variant	rs569689985
Chromosome Location	chr6:15662261-15662262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15660394..15662870-chr6:15679792..15681475,2	K562	blood:
2	chr6:15661311..15664347-chr6:16127901..16131243,6	K562	blood:
3	chr6:15659552..15664792-chr6:16126837..16130644,6	MCF-7	breast:
4	chr1:153621962..153623668-chr6:15660534..15662735,2	MCF-7	breast:
5	chr6:15661088..15663422-chr6:16128985..16131574,3	K562	blood:
6	chr6:15655170..15659272-chr6:15659508..15662983,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000007944	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3373756	chr6:15661798-15664346	Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15661800-15662600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr6:15661800-15662600	Flanking Active TSS	Brain Hippocampus Middle	brain
3	chr6:15661800-15663400	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr6:15661800-15663400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:15661800-15663600	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr6:15662000-15662400	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:15662000-15662400	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
8	chr6:15662000-15662400	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr6:15662000-15662400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:15662000-15662400	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr6:15662000-15662400	Flanking Active TSS	Primary T cells from cord blood	blood
12	chr6:15662000-15662400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
13	chr6:15662000-15662400	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
14	chr6:15662000-15662400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
15	chr6:15662000-15662400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
16	chr6:15662000-15662400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
17	chr6:15662000-15662400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
18	chr6:15662000-15662400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:15662000-15662400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:15662000-15662400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
21	chr6:15662000-15662400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:15662000-15662400	Flanking Active TSS	Brain Substantia Nigra	brain
23	chr6:15662000-15662400	Flanking Active TSS	Colon Smooth Muscle	Colon
24	chr6:15662000-15662400	Flanking Active TSS	Duodenum Mucosa	Duodenum
25	chr6:15662000-15662400	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
26	chr6:15662000-15662400	Active TSS	Fetal Brain Female	brain
27	chr6:15662000-15662400	Flanking Active TSS	Fetal Heart	heart
28	chr6:15662000-15662400	Flanking Active TSS	Fetal Intestine Large	intestine
29	chr6:15662000-15662400	Flanking Active TSS	Fetal Intestine Small	intestine
30	chr6:15662000-15662400	Flanking Active TSS	Placenta	Placenta
31	chr6:15662000-15662400	Flanking Active TSS	Fetal Stomach	stomach
32	chr6:15662000-15662400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
33	chr6:15662000-15662400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
34	chr6:15662000-15662400	Flanking Active TSS	Rectal Smooth Muscle	rectum
35	chr6:15662000-15662400	Enhancers	Spleen	Spleen
36	chr6:15662000-15662400	Flanking Active TSS	Hela-S3	cervix
37	chr6:15662000-15662400	Flanking Active TSS	NH-A	brain
38	chr6:15662000-15662400	Flanking Active TSS	Osteobl	bone
39	chr6:15662000-15662600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
40	chr6:15662000-15662600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:15662000-15662600	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:15662000-15662600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
43	chr6:15662000-15662600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
44	chr6:15662000-15662600	Flanking Active TSS	Primary B cells from peripheral blood	blood
45	chr6:15662000-15662600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
46	chr6:15662000-15662600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
47	chr6:15662000-15662600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr6:15662000-15662600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
49	chr6:15662000-15662600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:15662000-15662600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood

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