Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr6:44866236-44866626	H1-hESC	embryonic stem cell:	n/a	chr6:44866476-44866483 chr6:44866455-44866462
2	TEAD4	chr6:44866164-44866485	H1-hESC	embryonic stem cell:	n/a	n/a
3	TEAD4	chr6:44865978-44866536	ECC-1	luminal epithelium:	n/a	n/a
4	TEAD4	chr6:44866027-44866555	ECC-1	luminal epithelium:	n/a	n/a
5	TCF12	chr6:44865910-44866570	ECC-1	luminal epithelium:	n/a	chr6:44866476-44866483 chr6:44866455-44866462

Variant related genes	Relation type
NUDT19P4	TF binding region

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885861	chr6:44837356-45043618	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1033815	chr6:44845514-44938799	Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv5286	chr6:44865290-44909915	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:44859200-44889400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr6:44862600-44889400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:44863200-44866600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:44863600-44870400	Weak transcription	Aorta	Aorta
5	chr6:44864000-44866600	Enhancers	Fetal Lung	lung
6	chr6:44864200-44866600	Enhancers	Fetal Stomach	stomach
7	chr6:44864800-44888400	Weak transcription	Primary T cells from cord blood	blood
8	chr6:44866000-44866600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:44866000-44866600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:44866000-44866600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr6:44866000-44866600	Enhancers	Gastric	stomach
12	chr6:44866000-44866600	Enhancers	HSMMtube	muscle
13	chr6:44866000-44866600	Enhancers	NHDF-Ad	bronchial
14	chr6:44866000-44866600	Enhancers	NHLF	lung
15	chr6:44866200-44866400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr6:44866200-44866600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:44866200-44866600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr6:44866200-44866600	Enhancers	Placenta	Placenta
19	chr6:44866200-44866600	Enhancers	NH-A	brain
20	chr6:44866200-44866800	Enhancers	HSMM	muscle

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