Variant report

Variant	rs569735703
Chromosome Location	chr14:32669791-32669792
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr14:32669588-32670359	GM12878	blood:	n/a	n/a
2	ZNF143	chr14:32669700-32671377	GM12878	blood:	n/a	chr14:32671007-32671022 chr14:32671004-32671023
3	ZEB1	chr14:32669719-32673848	HepG2	liver:	n/a	n/a
4	IKZF1	chr14:32669575-32670421	GM12878	blood:	n/a	n/a
5	NFIC	chr14:32669547-32670084	GM12878	blood:	n/a	n/a
6	SPI1	chr14:32669643-32670058	HL-60	blood:	n/a	chr14:32669825-32669838
7	EP300	chr14:32669593-32670027	GM12878	blood:	n/a	chr14:32669822-32669836 chr14:32669828-32669842
8	SPI1	chr14:32669723-32669853	K562	blood:	n/a	chr14:32669825-32669838
9	SPI1	chr14:32669581-32670052	GM12891	blood:	n/a	chr14:32669825-32669838
10	IRF4	chr14:32669604-32670045	GM12878	blood:	n/a	n/a
11	SPI1	chr14:32669586-32670044	GM12891	blood:	n/a	chr14:32669825-32669838
12	REST	chr14:32669680-32669924	Hela-S3	cervix:	n/a	n/a
13	MEF2A	chr14:32669669-32670001	GM12878	blood:	n/a	n/a
14	SREBP2	chr14:32669379-32674149	GM12878	blood:	n/a	n/a
15	CUX1	chr14:32669557-32670402	GM12878	blood:	n/a	n/a
16	TBP	chr14:32669731-32670617	GM12878	blood:	n/a	n/a
17	CHD2	chr14:32669633-32670995	GM12878	blood:	n/a	n/a
18	BCLAF1	chr14:32669546-32670099	GM12878	blood:	n/a	n/a
19	MAZ	chr14:32669713-32670903	GM12878	blood:	n/a	n/a
20	EBF1	chr14:32669658-32670424	GM12878	blood:	n/a	n/a
21	SPI1	chr14:32669676-32670017	GM12878	blood:	n/a	chr14:32669825-32669838
22	MXI1	chr14:32669629-32673720	SK-N-SH	brain:	n/a	n/a
23	BCL11A	chr14:32669630-32669939	GM12878	blood:	n/a	n/a
24	RUNX3	chr14:32669535-32670136	GM12878	blood:	n/a	n/a
25	SPI1	chr14:32669301-32670327	GM12878	blood:	n/a	chr14:32669825-32669838
26	RUNX3	chr14:32669596-32670006	GM12878	blood:	n/a	n/a
27	EP300	chr14:32669578-32670795	GM12878	blood:	n/a	chr14:32669822-32669836 chr14:32669828-32669842
28	MEF2C	chr14:32669587-32670068	GM12878	blood:	n/a	chr14:32669834-32669849
29	NFIC	chr14:32669538-32670088	GM12878	blood:	n/a	n/a
30	MEF2A	chr14:32669501-32670091	GM12878	blood:	n/a	n/a
31	BCL11A	chr14:32669710-32669932	GM12878	blood:	n/a	n/a
32	EP300	chr14:32669630-32670433	GM12878	blood:	n/a	chr14:32669822-32669836 chr14:32669828-32669842
33	SPI1	chr14:32669682-32669954	GM12878	blood:	n/a	chr14:32669825-32669838
34	MXI1	chr14:32669569-32671039	GM12878	blood:	n/a	n/a
35	SPI1	chr14:32669651-32670050	HL-60	blood:	n/a	chr14:32669825-32669838

No.	Distal block	Cell Line	Cell type
1	chr14:32544618..32548147-chr14:32668083..32673759,9	K562	blood:
2	chr14:32665295..32667033-chr14:32668377..32670750,3	K562	blood:
3	chr14:32544948..32548496-chr14:32669195..32673537,9	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C14orf126-5	chr14:32669704-32670732	XLOC_010989

Variant related genes	Relation type
RNU6-7	TF binding region
ENSG00000100852	Chromatin interaction
ENSG00000258655	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832764	chr14:32564468-32723213	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv3380705	chr14:32668101-32670199	Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32667600-32670000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:32667600-32670000	Weak transcription	NHEK	skin
3	chr14:32668600-32669800	Weak transcription	Fetal Intestine Small	intestine
4	chr14:32669000-32669800	Enhancers	Primary B cells from peripheral blood	blood
5	chr14:32669200-32669800	Enhancers	Liver	Liver
6	chr14:32669200-32669800	Enhancers	Hela-S3	cervix
7	chr14:32669200-32669800	Flanking Active TSS	HepG2	liver
8	chr14:32669200-32669800	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr14:32669200-32670000	Enhancers	Adipose Nuclei	Adipose
10	chr14:32669200-32672400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:32669400-32669800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr14:32669400-32669800	Enhancers	Duodenum Mucosa	Duodenum
13	chr14:32669400-32670000	Flanking Active TSS	GM12878-XiMat	blood
14	chr14:32669400-32671600	Active TSS	A549	lung
15	chr14:32669400-32672400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
16	chr14:32669400-32673600	Flanking Active TSS	Primary hematopoietic stem cells	blood
17	chr14:32669600-32669800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:32669600-32669800	Enhancers	Primary T cells from cord blood	blood
19	chr14:32669600-32669800	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr14:32669600-32669800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr14:32669600-32669800	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr14:32669600-32669800	Enhancers	Brain Hippocampus Middle	brain
23	chr14:32669600-32670000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr14:32669600-32670000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr14:32669600-32670200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
26	chr14:32669600-32672400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:32669600-32673600	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr14:32669600-32674000	Active TSS	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links