Variant report

Variant	rs56975312
Chromosome Location	chr11:74190652-74190653
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr11:74190420-74190787	A549	lung:	n/a	chr11:74190592-74190603
2	RCOR1	chr11:74190452-74191167	K562	blood:	n/a	n/a
3	CEBPB	chr11:74190419-74190758	H1-hESC	embryonic stem cell:	n/a	chr11:74190592-74190603
4	CEBPB	chr11:74190419-74190773	IMR90	lung:	n/a	chr11:74190592-74190603
5	CEBPD	chr11:74190376-74190826	K562	blood:	n/a	n/a
6	CEBPB	chr11:74190479-74190743	K562	blood:	n/a	chr11:74190592-74190603
7	CEBPB	chr11:74190386-74190719	ECC-1	luminal epithelium:	n/a	chr11:74190592-74190603
8	CEBPB	chr11:74190437-74190743	A549	lung:	n/a	chr11:74190592-74190603
9	CEBPB	chr11:74190425-74190723	HepG2	liver:	n/a	chr11:74190592-74190603
10	ATF3	chr11:74190459-74190762	K562	blood:	n/a	n/a
11	CEBPB	chr11:74190434-74190759	Hela-S3	cervix:	n/a	chr11:74190592-74190603
12	CEBPB	chr11:74190516-74190675	HepG2	liver:	n/a	chr11:74190592-74190603
13	JUND	chr11:74190576-74190661	HepG2	liver:	n/a	n/a
14	CEBPB	chr11:74190407-74190892	A549	lung:	n/a	chr11:74190592-74190603
15	CEBPB	chr11:74190407-74190829	K562	blood:	n/a	chr11:74190592-74190603
16	CEBPB	chr11:74190509-74190812	ECC-1	luminal epithelium:	n/a	chr11:74190592-74190603
17	CEBPB	chr11:74190410-74190778	HepG2	liver:	n/a	chr11:74190592-74190603
18	CEBPB	chr11:74190473-74190802	MCF-7	breast:	n/a	chr11:74190592-74190603
19	CEBPB	chr11:74190398-74191031	K562	blood:	n/a	chr11:74190592-74190603
20	CEBPB	chr11:74190388-74190757	MCF-7	breast:	n/a	chr11:74190592-74190603
21	CEBPD	chr11:74190494-74190700	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:74185351..74193647-chr11:74202565..74206845,12	MCF-7	breast:
2	chr11:74183131..74186722-chr11:74188439..74190998,3	K562	blood:
3	chr11:74175333..74177141-chr11:74189553..74191217,2	K562	blood:
4	chr11:74189754..74191906-chr11:74197313..74199883,3	MCF-7	breast:

Variant related genes	Relation type
CYCSP27	TF binding region
ENSG00000175536	Chromatin interaction
ENSG00000254837	Chromatin interaction
ENSG00000077514	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58661357	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60912777	0.96[AFR][1000 genomes]
rs7106103	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757451	chr11:73842609-74545888	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv2759837	chr11:73842609-74557597	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	esv34979	chr11:73878688-74533452	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	esv2758277	chr11:73887567-74557597	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv825994	chr11:73936667-74534455	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
6	nsv832209	chr11:74155883-74329119	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
7	nsv897913	chr11:74171997-74216705	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74190200-74190800	Enhancers	HepG2	liver
2	chr11:74190200-74191400	Enhancers	Ovary	ovary
3	chr11:74190200-74191400	Enhancers	K562	blood
4	chr11:74190200-74192800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr11:74190400-74191000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr11:74190600-74191800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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