Variant report

Variant	rs56977111
Chromosome Location	chr6:82785210-82785211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs4562189	1.00[EUR][1000 genomes]
rs4706155	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60378796	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60414464	1.00[EUR][1000 genomes]
rs73476452	1.00[EUR][1000 genomes]
rs73749218	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021464	chr6:82738920-82876526	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830713	chr6:82761201-82953570	Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82782400-82786200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:82782800-82786400	Weak transcription	HSMM	muscle
3	chr6:82783200-82785600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr6:82783400-82786200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:82783400-82786400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:82783400-82793200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr6:82783400-82797800	Weak transcription	Left Ventricle	heart
8	chr6:82783600-82786400	Weak transcription	Fetal Muscle Leg	muscle
9	chr6:82783600-82786400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:82783600-82786400	Weak transcription	Osteobl	bone
11	chr6:82783600-82788000	Weak transcription	HepG2	liver
12	chr6:82784800-82786200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr6:82784800-82786400	Weak transcription	Adipose Nuclei	Adipose
14	chr6:82784800-82786400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:82784800-82787800	Weak transcription	Right Ventricle	heart
16	chr6:82785000-82786200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:82785000-82786200	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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