Variant report

Variant	rs56978169
Chromosome Location	chr19:45236126-45236127
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17658713	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17728272	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2927488	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2965102	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2965103	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2965104	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2965105	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4803749	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs56702353	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59170622	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912116	chr19:45146103-45298069	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
2	nsv833841	chr19:45208486-45308043	Enhancers Bivalent/Poised TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	23 gene(s)	inside rSNPs	diseases
3	esv3335183	chr19:45225161-45253316	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:45229000-45240800	Weak transcription	Right Atrium	heart
2	chr19:45229200-45238000	Weak transcription	Esophagus	oesophagus
3	chr19:45229200-45240800	Weak transcription	Spleen	Spleen
4	chr19:45231400-45238400	Weak transcription	Small Intestine	intestine
5	chr19:45231400-45240600	Weak transcription	Lung	lung
6	chr19:45232000-45239600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr19:45232000-45239800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr19:45232400-45240800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr19:45233000-45238400	Weak transcription	GM12878-XiMat	blood
10	chr19:45233200-45238000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr19:45235000-45236400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr19:45235000-45242000	Weak transcription	Colonic Mucosa	Colon
13	chr19:45235200-45236200	Enhancers	Stomach Mucosa	stomach
14	chr19:45235400-45236200	Enhancers	A549	lung
15	chr19:45235400-45238000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr19:45235400-45241800	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr19:45235400-45250400	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr19:45235600-45238000	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr19:45235800-45239800	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr19:45236000-45236200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr19:45236000-45240600	Weak transcription	Fetal Muscle Leg	muscle

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