Variant report

Variant	rs56978815
Chromosome Location	chr10:98561013-98561014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs58409956	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
3	nsv895910	chr10:98386483-98640994	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1053801	chr10:98506832-98610101	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
5	esv3422724	chr10:98558962-98563560	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98546000-98561200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr10:98550800-98561200	Weak transcription	Primary B cells from cord blood	blood
3	chr10:98554200-98561200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:98554800-98561200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr10:98555000-98561200	Weak transcription	Hela-S3	cervix
6	chr10:98555000-98561200	Weak transcription	Osteobl	bone
7	chr10:98555200-98561200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr10:98555200-98561200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:98555400-98561200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr10:98557800-98561200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr10:98558800-98561200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr10:98558800-98561200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr10:98558800-98561200	Weak transcription	Stomach Mucosa	stomach
14	chr10:98559200-98561200	Weak transcription	Colonic Mucosa	Colon
15	chr10:98559200-98561200	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr10:98560000-98561200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr10:98560200-98561200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr10:98560200-98561200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:98560600-98561200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr10:98560600-98561200	Weak transcription	Pancreas	Pancrea
21	chr10:98560800-98561200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr10:98560800-98561200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr10:98560800-98561200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:98560800-98561200	Weak transcription	Fetal Intestine Large	intestine
25	chr10:98560800-98561200	Weak transcription	Placenta	Placenta

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