Variant report

Variant	rs569788707
Chromosome Location	chr7:102678653-102678654
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:102676967..102679361-chr7:102702578..102705004,2	K562	blood:
2	chr7:102670106..102673764-chr7:102674096..102679357,5	K562	blood:

Variant related genes	Relation type
ENSG00000236226	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016563	chr7:101912320-102695860	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
2	nsv1028438	chr7:101912320-102704135	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
3	nsv868996	chr7:102332827-102991361	ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	esv2752138	chr7:102358320-102787135	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	esv1793320	chr7:102677917-102706209	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102676600-102683800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:102677200-102679400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr7:102677400-102679800	Weak transcription	Right Atrium	heart
4	chr7:102677600-102679200	Flanking Active TSS	K562	blood
5	chr7:102677600-102679600	Enhancers	Stomach Mucosa	stomach
6	chr7:102678000-102678800	Enhancers	Gastric	stomach
7	chr7:102678200-102679200	Enhancers	HUES6 Cell Line	embryonic stem cell
8	chr7:102678400-102678800	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr7:102678400-102678800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:102678400-102678800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr7:102678400-102678800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr7:102678400-102678800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr7:102678400-102678800	Enhancers	Fetal Lung	lung
14	chr7:102678400-102679200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr7:102678400-102679200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr7:102678400-102679200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr7:102678400-102679200	Enhancers	Fetal Muscle Trunk	muscle
18	chr7:102678400-102679200	Enhancers	Lung	lung
19	chr7:102678600-102679000	Active TSS	HepG2	liver
20	chr7:102678600-102679200	Enhancers	Fetal Thymus	thymus
21	chr7:102678600-102684000	Weak transcription	Pancreas	Pancrea
22	chr7:102678600-102684600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links